FFCP PHASE1:Hg19::chr8:143781405..143781425,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=54742 | |EntrezGene=entrezgene:54742 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=24225 | |HGNC=HGNC:24225 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=Q17RY6 | |UniProt=uniprot:Q17RY6 | ||
|association_with_transcript=-103bp_to_ENST00000292430,ENST00000561179,NM_001160354,NM_001160355,NM_017527,uc011ljv.1,uc011ljw.1,uc011ljx.1_5end | |association_with_transcript=-103bp_to_ENST00000292430,ENST00000561179,NM_001160354,NM_001160355,NM_017527,uc011ljv.1,uc011ljw.1,uc011ljx.1_5end | ||
|cluster_id=chr8:143781405..143781425,+ | |||
|coexpression_cluster_id=C106 | |coexpression_cluster_id=C106 | ||
|description=CAGE_peak_5_at_LY6K_5end | |description=CAGE_peak_5_at_LY6K_5end | ||
Revision as of 15:47, 31 July 2015
| Short description: | p5@LY6K |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_LY6K_5end |
| Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
| Association with transcript: | -103bp_to_ENST00000292430, ENST00000561179, NM_001160354, NM_001160355, NM_017527, uc011ljv.1, uc011ljw.1, uc011ljx.1_5end |
| EntrezGene: | 54742 |
| HGNC: | 24225 |
| UniProt: | Q17RY6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@LY6K |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| classical monocyte | 3.69e-19 | 42 |
| CD14-positive, CD16-negative classical monocyte | 3.69e-19 | 42 |
| defensive cell | 4.40e-16 | 48 |
| phagocyte | 4.40e-16 | 48 |
| monopoietic cell | 8.19e-12 | 59 |
| monocyte | 8.19e-12 | 59 |
| monoblast | 8.19e-12 | 59 |
| promonocyte | 8.19e-12 | 59 |
| macrophage dendritic cell progenitor | 2.88e-11 | 61 |
| myeloid lineage restricted progenitor cell | 4.75e-10 | 66 |
Showing 1 to 10 of 14 entries
| Ontology term | p-value | n |
|---|---|---|
| larynx | 5.02e-25 | 9 |
| upper respiratory tract | 9.08e-16 | 19 |
| segment of respiratory tract | 1.27e-09 | 47 |
| respiratory primordium | 1.48e-09 | 38 |
| endoderm of foregut | 1.48e-09 | 38 |
| bone marrow | 4.22e-09 | 76 |
| bone element | 4.45e-08 | 82 |
| respiratory tract | 6.83e-08 | 54 |
| skeletal element | 8.72e-08 | 90 |
| skeletal system | 3.09e-07 | 100 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 4.51e-11 | 106 |
| squamous cell carcinoma | 6.99e-10 | 14 |
| cell type cancer | 1.22e-08 | 143 |
Showing 1 to 3 of 3 entries
