FFCP PHASE1:Mm9::chr19:28085572..28085579,-: Difference between revisions
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{{FFCP|EntrezGene=19726|HGNC=|MCL_coexpression_id=0|UniProt=G5E890|association_with_transcript=-34bp_to_ENSMUST00000046898_5end|description=CAGE_peak_9_at_Rfx3_5end|id=chr19:28085572..28085579,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!8.41e-13!63;UBERON:0000955!5.55e-12!50;UBERON:0006238!5.55e-12!50;UBERON:0002616!1.94e-11!49;UBERON:0003056!2.50e-11!49;UBERON:0001049!1.15e-10!52;UBERON:0005068!1.15e-10!52;UBERON:0006241!1.15e-10!52;UBERON:0007135!1.15e-10!52;UBERON:0003080!6.95e-10!40;UBERON:0002346!8.07e-10!71;UBERON:0003075!8.07e-10!71;UBERON:0007284!8.07e-10!71;UBERON:0002780!1.86e-09!39;UBERON:0001890!1.86e-09!39;UBERON:0006240!1.86e-09!39;UBERON:0007811!1.88e-09!86;UBERON:0000153!3.08e-09!94;UBERON:0001017!7.22e-09!73;UBERON:0005743!7.22e-09!73;UBERON:0000073!1.61e-08!75;UBERON:0001016!1.61e-08!75;UBERON:0002020!1.85e-07!34;UBERON:0002791!1.94e-07!29;UBERON:0003528!1.94e-07!29;UBERON:0001893!1.94e-07!29;UBERON:0004121!2.06e-07!102;UBERON:0000924!2.06e-07!102;UBERON:0006601!2.06e-07!102;UBERON:0000025!6.71e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.33e-08,54;UBERON:0001049,5.20e-07,52;UBERON:0005068,5.20e-07,52;UBERON:0006241,5.20e-07,52;UBERON:0007135,5.20e-07,52;UBERON:0001017,8.55e-07,73|phase1_expression=0.320297694209588,0,0,0,0.500895729946347,0,0.233612640595526,0.129123323441576,0,0,0,0,0.171200729931206,0,0,0.202475267389826,0,0,0.137114433605739,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15265491596466,0.103689612308478,0.270011876663381,0.210324961351382,0,0.220868540951614,0.122490799214954,0.479227355091182,0,0,0.255374676170375,1.22885226604995,0.263772575460388,0.457438218012048,1.04182674111352,0.279182999001381,0.56276261003168,0.916789486660861,0,1.13897344639282,0.372798891650601,0,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0,0,0,0,0.117588707135705,0,0.741584903203122,0.144599356919912,0,0,0.441683036920787,0,0,1.17112318804619,1.25668024088073,0,0,0,0,0.449371918214468,0,0.251308704225729,0,0.511430914660661,1.0389402227978,0.162241263067758,0.203678727700633,0.124406970610093,0,0.420883711772948,0.390361328888111,0.229902104433473,0,1.05493372485001,0.408218994907967,0.2562274405697,0.374806898238915,0,0.215567992932842,0.189106080167819,0,0.43839146485515,0.556094498451196,0,0,0,0,0,0.284163499395593,0.207125772535502,0.469052119962192,0.180062061461015,0,0,0,0.232533944750408,0,0.350296027101508,0,0,0,0,0,0,0.210289948564127,0.92614151141356,0,0,0.213288250535234,0,0,0,0,0,0.474529061544512,0.164698954724011,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0,0.126473074248515,0,0.156998727841375,0,0,0.333690211432188,0.196558995113203,0.224862112384854,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0.739012760666419,0,0,0.339490171550376,0.704070744865506,0.837531287209079,0.952174563544055,0.585400943573396,0.315270288212382,0.44292937929755,0.637819074629948,0.491589944147214,0.518054945597687,0.433947175744535,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0,0,0.430846795465598,0.238968797952552,0.668396022247182,0,0,0,0,0.642642632843614,1.13552068166615,0,0.325773918707152,1.64970122972535,0,0,0,0,0,0,0,0,0,0,0,0,1.02131881726136,0.36012218806262,0,0.214337035031592,1.24138163549592,0,0.329098041204242,0.913394847343798,0,0,0,0.16488625294148,0,0.180938774784468,0,0,0.582961673259701,0,0,0,0,0,0,0.228778173206523,0.169978429993855,0,0,0,0.316335993581135,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0,0.165306911450672,0,0,0,13.5286305284206,0.149516546043979,0,0,0,0.337912250981556,0.352071715937262,0,0,1.20792060413003,6.04863013141517,0,0,0.102710957164827,0,0.179026695667481,0,0.240390899039938,0.147689527174577,0.403865799792591,0,0.403304740547362,0.487289403698762,0.384847366561318,0.116876902181569,0,0,0,0.167884616364078,0,0.187682475451182,0,0,0,1.6942555278512,0.920650473014354,2.29158205375759,0.515559547031063,1.37016503954128,0.755393897389701,0,0.45032120322422,0.453142408984205,0.51776031175182,0,1.59609949360412,0.853668028770671,0.243106717068294,0.419226325255965,0,0,0.206035057238894,0,0.252697211763798,0.25347929989024,0.188626341386076,0.187283014939765,0.448176066834085,0.402048282689293,0.476293691283074,0.463537303779422,0,0,0.441596760403192,0,0,0,0.290692833264657,0.376437521661322,0.169229215783353,0.182927972872773,0.263069711437843,0.271608227691724,0.561142271657738,0.118635018124174,0.197008964751127,0,0.154936841185966,0.385813221962283,0.499621155875892,0.233931608445408,0.429742108096597,0,0,0|short_description=p9@Rfx3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:19726 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:G5E890 | |||
|association_with_transcript=-34bp_to_ENSMUST00000046898_5end | |||
|cluster_id=chr19:28085572..28085579,- | |||
|description=CAGE_peak_9_at_Rfx3_5end | |||
|id=chr19:28085572..28085579,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.41e-13!63;UBERON:0000955!5.55e-12!50;UBERON:0006238!5.55e-12!50;UBERON:0002616!1.94e-11!49;UBERON:0003056!2.50e-11!49;UBERON:0001049!1.15e-10!52;UBERON:0005068!1.15e-10!52;UBERON:0006241!1.15e-10!52;UBERON:0007135!1.15e-10!52;UBERON:0003080!6.95e-10!40;UBERON:0002346!8.07e-10!71;UBERON:0003075!8.07e-10!71;UBERON:0007284!8.07e-10!71;UBERON:0002780!1.86e-09!39;UBERON:0001890!1.86e-09!39;UBERON:0006240!1.86e-09!39;UBERON:0007811!1.88e-09!86;UBERON:0000153!3.08e-09!94;UBERON:0001017!7.22e-09!73;UBERON:0005743!7.22e-09!73;UBERON:0000073!1.61e-08!75;UBERON:0001016!1.61e-08!75;UBERON:0002020!1.85e-07!34;UBERON:0002791!1.94e-07!29;UBERON:0003528!1.94e-07!29;UBERON:0001893!1.94e-07!29;UBERON:0004121!2.06e-07!102;UBERON:0000924!2.06e-07!102;UBERON:0006601!2.06e-07!102;UBERON:0000025!6.71e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.33e-08,54;UBERON:0001049,5.20e-07,52;UBERON:0005068,5.20e-07,52;UBERON:0006241,5.20e-07,52;UBERON:0007135,5.20e-07,52;UBERON:0001017,8.55e-07,73 | |||
|phase1_expression=0.320297694209588,0,0,0,0.500895729946347,0,0.233612640595526,0.129123323441576,0,0,0,0,0.171200729931206,0,0,0.202475267389826,0,0,0.137114433605739,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15265491596466,0.103689612308478,0.270011876663381,0.210324961351382,0,0.220868540951614,0.122490799214954,0.479227355091182,0,0,0.255374676170375,1.22885226604995,0.263772575460388,0.457438218012048,1.04182674111352,0.279182999001381,0.56276261003168,0.916789486660861,0,1.13897344639282,0.372798891650601,0,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0,0,0,0,0.117588707135705,0,0.741584903203122,0.144599356919912,0,0,0.441683036920787,0,0,1.17112318804619,1.25668024088073,0,0,0,0,0.449371918214468,0,0.251308704225729,0,0.511430914660661,1.0389402227978,0.162241263067758,0.203678727700633,0.124406970610093,0,0.420883711772948,0.390361328888111,0.229902104433473,0,1.05493372485001,0.408218994907967,0.2562274405697,0.374806898238915,0,0.215567992932842,0.189106080167819,0,0.43839146485515,0.556094498451196,0,0,0,0,0,0.284163499395593,0.207125772535502,0.469052119962192,0.180062061461015,0,0,0,0.232533944750408,0,0.350296027101508,0,0,0,0,0,0,0.210289948564127,0.92614151141356,0,0,0.213288250535234,0,0,0,0,0,0.474529061544512,0.164698954724011,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0,0.126473074248515,0,0.156998727841375,0,0,0.333690211432188,0.196558995113203,0.224862112384854,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0.739012760666419,0,0,0.339490171550376,0.704070744865506,0.837531287209079,0.952174563544055,0.585400943573396,0.315270288212382,0.44292937929755,0.637819074629948,0.491589944147214,0.518054945597687,0.433947175744535,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0,0,0.430846795465598,0.238968797952552,0.668396022247182,0,0,0,0,0.642642632843614,1.13552068166615,0,0.325773918707152,1.64970122972535,0,0,0,0,0,0,0,0,0,0,0,0,1.02131881726136,0.36012218806262,0,0.214337035031592,1.24138163549592,0,0.329098041204242,0.913394847343798,0,0,0,0.16488625294148,0,0.180938774784468,0,0,0.582961673259701,0,0,0,0,0,0,0.228778173206523,0.169978429993855,0,0,0,0.316335993581135,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0,0.165306911450672,0,0,0,13.5286305284206,0.149516546043979,0,0,0,0.337912250981556,0.352071715937262,0,0,1.20792060413003,6.04863013141517,0,0,0.102710957164827,0,0.179026695667481,0,0.240390899039938,0.147689527174577,0.403865799792591,0,0.403304740547362,0.487289403698762,0.384847366561318,0.116876902181569,0,0,0,0.167884616364078,0,0.187682475451182,0,0,0,1.6942555278512,0.920650473014354,2.29158205375759,0.515559547031063,1.37016503954128,0.755393897389701,0,0.45032120322422,0.453142408984205,0.51776031175182,0,1.59609949360412,0.853668028770671,0.243106717068294,0.419226325255965,0,0,0.206035057238894,0,0.252697211763798,0.25347929989024,0.188626341386076,0.187283014939765,0.448176066834085,0.402048282689293,0.476293691283074,0.463537303779422,0,0,0.441596760403192,0,0,0,0.290692833264657,0.376437521661322,0.169229215783353,0.182927972872773,0.263069711437843,0.271608227691724,0.561142271657738,0.118635018124174,0.197008964751127,0,0.154936841185966,0.385813221962283,0.499621155875892,0.233931608445408,0.429742108096597,0,0,0 | |||
|short_description=p9@Rfx3 | |||
}} |
Revision as of 20:15, 3 August 2015
Short description: | p9@Rfx3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Rfx3_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -34bp_to_ENSMUST00000046898_5end |
EntrezGene: | 19726 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.33e-08 | 54 |
neural tube | 5.20e-07 | 52 |
neural rod | 5.20e-07 | 52 |
future spinal cord | 5.20e-07 | 52 |
neural keel | 5.20e-07 | 52 |
central nervous system | 8.55e-07 | 73 |