FFCP PHASE1:Mm9::chr5:148118614..148118625,-: Difference between revisions
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{{FFCP|EntrezGene=12591|HGNC=|MCL_coexpression_id=489|UniProt=P43241,Q543L9|association_with_transcript=199bp_to_NM_007673,uc009anz.1_5end|description=CAGE_peak_4_at_Cdx2_5end|id=chr5:148118614..148118625,-|ontology_enrichment_celltype=CL:0002563!8.78e-11!9;CL:0002251!8.78e-11!9;CL:0000239!6.03e-08!6;CL:0000677!6.03e-08!6;CL:0000212!6.03e-08!6;CL:0000584!6.03e-08!6|ontology_enrichment_celltype_v019_2=CL:0002563,2.98e-17,9;CL:0002251,2.98e-17,9;CL:0000239,1.98e-12,6;CL:0000677,1.98e-12,6;CL:0000584,1.98e-12,6;CL:0000075,1.49e-10,7;CL:0002076,1.09e-09,15;CL:0000066,1.17e-09,25;CL:0000682,3.33e-07,3;CL:0000349,4.93e-07,3;CL:0000351,4.93e-07,3;CL:0000223,7.20e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!7.70e-24!43;UBERON:0005409!8.91e-21!59;UBERON:0000344!6.49e-18!15;UBERON:0001242!9.69e-16!13;UBERON:0000060!9.69e-16!13;UBERON:0001262!9.69e-16!13;UBERON:0004786!9.69e-16!13;UBERON:0004923!6.05e-14!24;UBERON:0003350!8.78e-11!9;UBERON:0004808!8.78e-11!9;UBERON:0001277!8.78e-11!9;UBERON:0000485!2.14e-08!11;UBERON:0004119!2.65e-08!130;UBERON:0000925!2.65e-08!130;UBERON:0006595!2.65e-08!130;UBERON:0001007!2.63e-07!128;UBERON:0001555!2.63e-07!128;UBERON:0007026!2.63e-07!128|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.75e-59,31;UBERON:0005409,1.83e-39,47;UBERON:0000344,2.01e-29,15;UBERON:0001242,1.04e-25,13;UBERON:0001262,1.04e-25,13;UBERON:0004786,1.04e-25,13;UBERON:0004923,4.26e-22,24;UBERON:0003350,2.98e-17,9;UBERON:0004808,2.98e-17,9;UBERON:0001277,2.98e-17,9;UBERON:0004119,1.04e-15,118;UBERON:0000925,1.04e-15,118;UBERON:0006595,1.04e-15,118;UBERON:0000485,8.21e-14,11;UBERON:0001007,8.22e-14,116;UBERON:0001555,8.22e-14,116;UBERON:0007026,8.22e-14,116;UBERON:0004921,5.72e-12,114;UBERON:0002108,1.92e-10,4;UBERON:0000331,2.53e-08,3;UBERON:0002116,2.53e-08,3;UBERON:0001204,2.53e-08,3;UBERON:0001168,2.53e-08,3;UBERON:0000358,4.93e-07,3;UBERON:0000307,4.93e-07,3;UBERON:0007010,4.93e-07,3|phase1_expression=0,11.1672130444596,3.18499467572675,2.11724947914781,2.50447864973174,4.02910252588535,6.77476657727024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55987876469451,6.42345986988076,9.76194338995534,2.15380998079537,5.817723282519,19.3823887845501,11.089325709437,10.4213340007993,0,0,0,1.44425809875637,2.1610503896604,3.06254034393554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.91347103775248,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,24.2309289583559,0,0,6.89734049063197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97376904685418,3.70230793328962,0.853153002140936,1.16118335930219,4.25262622362908,8.47070803418039,8.67274370994994,9.13083005340284,6.16887780007865,8.89374355509659,7.54005626400809,6.16765063327568,5.8489226135736,4.49409704327111,5.40345124686736,5.57595565112228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40803024838226,5.71946591332314,0,0,0,0,0,0,9.03590593552537,0,0,0,0,0,0,0,0,0,0,0,0,0,0.86404272657441,0.418176592028937,0.655087691238533,0,0.0826534557253359,0,15.035336901848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25984164595559,0,0,0,0.295379054349154,0,0.0762068066549998,0,0.0974578807397524,0,0,0,2.88581739386284,16.2382080463151,1.51096154727671,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0.367687016900028,0.888986911206461,0,0.962757628775446,0.505394423527595,0,0,0.0936415074698824,0.256100609619477,0.34461281373368,0.476293691283074,0.231768651889711,0.38581844092741,0,0.441596760403192,0,0.177475806159338,0,0.290692833264657,0.188218760830661,0.169229215783353,0.182927972872773,0,0.135804113845862,1.12228454331548,0.118635018124174,0.197008964751127,0.818462086339379,0.309873682371932,0,0,0.701794825336225,0.429742108096597,0,0,0|short_description=p4@Cdx2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:12591 | |||
|HGNC= | |||
|MCL_coexpression_id=489 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P43241,uniprot:Q543L9 | |||
|association_with_transcript=199bp_to_NM_007673,uc009anz.1_5end | |||
|cluster_id=chr5:148118614..148118625,- | |||
|description=CAGE_peak_4_at_Cdx2_5end | |||
|id=chr5:148118614..148118625,- | |||
|ontology_enrichment_celltype=CL:0002563!8.78e-11!9;CL:0002251!8.78e-11!9;CL:0000239!6.03e-08!6;CL:0000677!6.03e-08!6;CL:0000212!6.03e-08!6;CL:0000584!6.03e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.98e-17,9;CL:0002251,2.98e-17,9;CL:0000239,1.98e-12,6;CL:0000677,1.98e-12,6;CL:0000584,1.98e-12,6;CL:0000075,1.49e-10,7;CL:0002076,1.09e-09,15;CL:0000066,1.17e-09,25;CL:0000682,3.33e-07,3;CL:0000349,4.93e-07,3;CL:0000351,4.93e-07,3;CL:0000223,7.20e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!7.70e-24!43;UBERON:0005409!8.91e-21!59;UBERON:0000344!6.49e-18!15;UBERON:0001242!9.69e-16!13;UBERON:0000060!9.69e-16!13;UBERON:0001262!9.69e-16!13;UBERON:0004786!9.69e-16!13;UBERON:0004923!6.05e-14!24;UBERON:0003350!8.78e-11!9;UBERON:0004808!8.78e-11!9;UBERON:0001277!8.78e-11!9;UBERON:0000485!2.14e-08!11;UBERON:0004119!2.65e-08!130;UBERON:0000925!2.65e-08!130;UBERON:0006595!2.65e-08!130;UBERON:0001007!2.63e-07!128;UBERON:0001555!2.63e-07!128;UBERON:0007026!2.63e-07!128 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.75e-59,31;UBERON:0005409,1.83e-39,47;UBERON:0000344,2.01e-29,15;UBERON:0001242,1.04e-25,13;UBERON:0001262,1.04e-25,13;UBERON:0004786,1.04e-25,13;UBERON:0004923,4.26e-22,24;UBERON:0003350,2.98e-17,9;UBERON:0004808,2.98e-17,9;UBERON:0001277,2.98e-17,9;UBERON:0004119,1.04e-15,118;UBERON:0000925,1.04e-15,118;UBERON:0006595,1.04e-15,118;UBERON:0000485,8.21e-14,11;UBERON:0001007,8.22e-14,116;UBERON:0001555,8.22e-14,116;UBERON:0007026,8.22e-14,116;UBERON:0004921,5.72e-12,114;UBERON:0002108,1.92e-10,4;UBERON:0000331,2.53e-08,3;UBERON:0002116,2.53e-08,3;UBERON:0001204,2.53e-08,3;UBERON:0001168,2.53e-08,3;UBERON:0000358,4.93e-07,3;UBERON:0000307,4.93e-07,3;UBERON:0007010,4.93e-07,3 | |||
|phase1_expression=0,11.1672130444596,3.18499467572675,2.11724947914781,2.50447864973174,4.02910252588535,6.77476657727024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55987876469451,6.42345986988076,9.76194338995534,2.15380998079537,5.817723282519,19.3823887845501,11.089325709437,10.4213340007993,0,0,0,1.44425809875637,2.1610503896604,3.06254034393554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.91347103775248,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,24.2309289583559,0,0,6.89734049063197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97376904685418,3.70230793328962,0.853153002140936,1.16118335930219,4.25262622362908,8.47070803418039,8.67274370994994,9.13083005340284,6.16887780007865,8.89374355509659,7.54005626400809,6.16765063327568,5.8489226135736,4.49409704327111,5.40345124686736,5.57595565112228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40803024838226,5.71946591332314,0,0,0,0,0,0,9.03590593552537,0,0,0,0,0,0,0,0,0,0,0,0,0,0.86404272657441,0.418176592028937,0.655087691238533,0,0.0826534557253359,0,15.035336901848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25984164595559,0,0,0,0.295379054349154,0,0.0762068066549998,0,0.0974578807397524,0,0,0,2.88581739386284,16.2382080463151,1.51096154727671,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0.367687016900028,0.888986911206461,0,0.962757628775446,0.505394423527595,0,0,0.0936415074698824,0.256100609619477,0.34461281373368,0.476293691283074,0.231768651889711,0.38581844092741,0,0.441596760403192,0,0.177475806159338,0,0.290692833264657,0.188218760830661,0.169229215783353,0.182927972872773,0,0.135804113845862,1.12228454331548,0.118635018124174,0.197008964751127,0.818462086339379,0.309873682371932,0,0,0.701794825336225,0.429742108096597,0,0,0 | |||
|short_description=p4@Cdx2 | |||
}} |
Revision as of 01:58, 4 August 2015
Short description: | p4@Cdx2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Cdx2_5end |
Coexpression cluster: | MCL_coexpression_mm9:489 |
Association with transcript: | 199bp_to_NM_007673, uc009anz.1_5end |
EntrezGene: | 12591 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.98e-17 | 9 |
epithelial cell of alimentary canal | 2.98e-17 | 9 |
brush border epithelial cell | 1.98e-12 | 6 |
gut absorptive cell | 1.98e-12 | 6 |
enterocyte | 1.98e-12 | 6 |
columnar/cuboidal epithelial cell | 1.49e-10 | 7 |
endo-epithelial cell | 1.09e-09 | 15 |
epithelial cell | 1.17e-09 | 25 |
M cell of gut | 3.33e-07 | 3 |
extraembryonic cell | 4.93e-07 | 3 |
trophoblast cell | 4.93e-07 | 3 |
endodermal cell | 7.20e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 6.75e-59 | 31 |
gastrointestinal system | 1.83e-39 | 47 |
mucosa | 2.01e-29 | 15 |
intestinal mucosa | 1.04e-25 | 13 |
wall of intestine | 1.04e-25 | 13 |
gastrointestinal system mucosa | 1.04e-25 | 13 |
organ component layer | 4.26e-22 | 24 |
epithelium of mucosa | 2.98e-17 | 9 |
gastrointestinal system epithelium | 2.98e-17 | 9 |
intestinal epithelium | 2.98e-17 | 9 |
endoderm-derived structure | 1.04e-15 | 118 |
endoderm | 1.04e-15 | 118 |
presumptive endoderm | 1.04e-15 | 118 |
simple columnar epithelium | 8.21e-14 | 11 |
digestive system | 8.22e-14 | 116 |
digestive tract | 8.22e-14 | 116 |
primitive gut | 8.22e-14 | 116 |
subdivision of digestive tract | 5.72e-12 | 114 |
small intestine | 1.92e-10 | 4 |
ileal mucosa | 2.53e-08 | 3 |
ileum | 2.53e-08 | 3 |
mucosa of small intestine | 2.53e-08 | 3 |
wall of small intestine | 2.53e-08 | 3 |
blastocyst | 4.93e-07 | 3 |
blastula | 4.93e-07 | 3 |
cleaving embryo | 4.93e-07 | 3 |