FFCP PHASE1:Mm9::chr14:56262637..56262659,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=74140|HGNC=|MCL_coexpression_id=12|UniProt=Q9DBU0|association_with_transcript=0bp_to_ENSMUST00000122358,NM_028780,uc007tzt.1_5end|description=CAGE_peak_4_at_Tm9sf1_5end|id=chr14:56262637..56262659,-|ontology_enrichment_celltype=CL:0002563!7.90e-07!9;CL:0002251!7.90e-07!9;CL:0000066!9.55e-07!25|ontology_enrichment_celltype_v019_2=CL:0000066,1.91e-10,25;CL:0002563,6.35e-10,9;CL:0002251,6.35e-10,9;CL:0000223,3.86e-09,20;CL:0002076,1.80e-08,15;CL:0000239,7.67e-08,6;CL:0000677,7.67e-08,6;CL:0000584,7.67e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!6.73e-19!130;UBERON:0000925!6.73e-19!130;UBERON:0006595!6.73e-19!130;UBERON:0000160!7.05e-19!43;UBERON:0001007!5.08e-18!128;UBERON:0001555!5.08e-18!128;UBERON:0007026!5.08e-18!128;UBERON:0004921!7.51e-17!126;UBERON:0004185!7.51e-17!126;UBERON:0005409!5.72e-14!59;UBERON:0000344!2.49e-10!15;UBERON:0001242!4.44e-09!13;UBERON:0000060!4.44e-09!13;UBERON:0001262!4.44e-09!13;UBERON:0004786!4.44e-09!13;UBERON:0002108!3.91e-07!16;UBERON:0004923!5.04e-07!24;UBERON:0003350!7.90e-07!9;UBERON:0004808!7.90e-07!9;UBERON:0001277!7.90e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.70e-23,31;UBERON:0000344,1.84e-15,15;UBERON:0005409,7.67e-15,47;UBERON:0004119,4.11e-14,118;UBERON:0000925,4.11e-14,118;UBERON:0006595,4.11e-14,118;UBERON:0001242,1.77e-13,13;UBERON:0001262,1.77e-13,13;UBERON:0004786,1.77e-13,13;UBERON:0001007,4.04e-13,116;UBERON:0001555,4.04e-13,116;UBERON:0007026,4.04e-13,116;UBERON:0004921,7.90e-12,114;UBERON:0004923,5.98e-11,24;UBERON:0003350,6.35e-10,9;UBERON:0004808,6.35e-10,9;UBERON:0001277,6.35e-10,9;UBERON:0000485,1.40e-07,11;UBERON:0007023,3.24e-07,51|phase1_expression=0.480446541314382,14.3079917132138,14.1049764210756,5.44435580352294,9.01612313903425,6.37941233265181,8.41005506143892,1.03298658753261,1.68946466582,1.63845168425395,0.513653904676515,0.638177271962691,0.513602189793617,1.31130603628496,0.666219523631325,0.404950534779652,0.699561878128147,0.946386496074713,0.548457734422955,0.84877930359606,1.02051948181284,0.794327609607082,0.261199789138935,4.7997726838022,6.42345986988076,9.76194338995534,8.18447792702242,5.817723282519,3.99049180858385,3.78045194639896,7.76056787293567,0,0,0,2.59966457776147,2.1610503896604,3.47087905646027,0.418531630736908,0,0,0,1.36609096991689,0.485510353031154,0.125896817975577,0.202753862439029,0.183546752161682,0.782391344348039,0.218025156380447,0.219686182734472,0.777719596297134,0.279972843250725,0,2.68452169692378,0,1.00828139742739,0.514518872071894,0.286533439938757,0.515672092277442,0,0,0,0.677689064138264,0.889294796111139,0.449949858640699,0,0.7104801149461,0,1.15265491596466,0,0.135005938331691,0.420649922702764,0,0.220868540951614,0.122490799214954,0.191690942036473,0,0,0,0,0,0.182975287204819,0,0.558365998002762,0,0,0,0.284743361598206,0,0.37863096666592,0,0.289864488701678,0.860423876981386,2.03991400112325,2.69851595818909,5.84798775702902,0.896053774194671,0.983110940922263,0.511290967734173,0,1.06001872353102,0.422530259330042,0,0,0,3.46385665617943,3.80039798212648,1.01104889002957,1.59857431606684,0.517875767294343,0.29688427812965,0.173485326766136,0.304465478312141,1.38369298353635,0.904335843315735,0.823120949949934,0.251333182659351,1.23597483867187,0.144599356919912,0.884610551949874,0.808834249737046,0,0.484875253135222,1.86391761218122,0,0,4.85368404896324,0.479260498023681,0,0.762421362438388,0,0,0.251308704225729,0,0,0.20778804455956,0,0.509196819251581,1.7416975885413,4.80173241023982,1.26265113531884,0.260240885925407,0,0,0.30140963567143,0,0.12811372028485,0.468508622798644,0.776110112217047,0,0.756424320671277,0.175951124163949,0.43839146485515,0.278047249225598,0.696504333044333,0.411564272815887,0.398068533636986,0.702213187313235,0.51469581422943,0,0.414251545071004,0,0.36012412292203,0,0,0.154267112887378,0.232533944750408,0,0,0.16455984991348,0.492502392237286,0.324275238183423,0.292399974850665,0.219550115291051,0,0.210289948564127,0.205809224758569,3.63460661282178,3.96675849995316,0.426576501070468,0,1.41754207454303,1.81515172161008,2.66853652613844,3.23383564391351,2.37264530772256,3.29397909448022,2.5133520880027,3.18330355265841,2.72949721966768,4.49409704327111,2.37751854862164,3.98282546508734,0.948339504765408,0.456994050438915,0,1.4255592949172,0.969762435838129,1.05203729835478,0.69560190836683,1.18088118383682,1.72698600625512,1.85095745882701,1.1858105083486,0.83422552858047,0.589676985339609,0.449724224769707,0.405720242777006,0.482354319504834,0.50925170356284,0.575392274901621,1.29708181420028,1.09824565275233,0,0.744281895337007,1.5601883655728,1.76805214562978,1.07638448113147,4.3419916922703,2.21703828199926,0.568474235311454,0.488894929326078,0.848725428875941,0.704070744865506,0.502518772325447,0.952174563544055,1.17080188714679,0.788175720530955,1.10732344824387,0.797273843287435,0.491589944147214,1.20879487306127,1.01254341007058,0,1.63171705145613,15.2446924635901,8.00216564283724,0.321101179975584,0.117211686592203,0,0.504941854408746,0.315508219416257,0.390438744296638,0.430846795465598,0,0,0,0.809621403349789,0,0,0,0.283880170416537,0.178065603667255,0.81443479676788,1.48473110675282,3.98235415019888,0.728341908464944,1.209294227859,2.82907619633847,1.18120757152309,0.922305443831782,1.29214146584111,1.81766864738753,2.13898427030833,1.58018378967908,2.10837217149998,2.06271086496374,0,0.36012218806262,1.03486947026204,0.643011105094777,0.886701168211368,1.24858172321449,0.987294123612726,0.913394847343798,2.11204537257339,1.69465656691056,4.85162475720916,0.32977250588296,0.645857706783622,0.241251699712623,0.596861720015682,0.656563598980245,4.08073171281791,0,0.170870880797853,0.206386867963223,0,0.565105371014073,0.410082683163076,0.228778173206523,0.339956859987711,0.839708713941948,0.829199842826543,0,0.158167996790568,0.813277868507395,0.432021363287205,0.418176592028937,1.31017538247707,0.674321731924103,0.743881101528023,1.30877970992015,2.20345454596048,4.34937519160848,2.25477175473676,0,0.165458490457098,0,0.258319646955462,0.506868376472335,0.469428954583016,0.2604087696879,0.209718688851422,0.966336483304024,0.288030006257865,0.316011120628178,1.01362607645082,0.616265742988964,0.389762468933385,0.716106782669926,0.39736270956253,0.600977247599844,0.443068581523732,0.302899349844443,0.15241361331,0.201652370273681,0.584747284438515,0,0,1.36038230169127,0.443971906748129,1.79427713218951,2.01461539636894,0.579568782096571,2.25218970541418,1.83151624267265,0.857473516316263,4.01257683228291,0,0.460325236507177,0,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0,0.341467211508268,0.486213434136588,0,0,0.44449345560323,0.618105171716683,0.64183841918363,0.252697211763798,0.25347929989024,0.754505365544305,0.37456602987953,0.384150914429216,0.34461281373368,0,0.695305955669133,0.964546102318525,1.23625770240992,0.735994600671987,0.685738504770831,0.70990322463735,0.715308569841963,0.726732083161643,0.564656282491984,0.592302255241736,0.365855945745545,0.789209134313529,0.679020569229309,0.561142271657738,0.355905054372522,0.0985044823755635,0,0.619747364743864,0.192906610981141,1.24905288968973,0.467863216890817,1.07435527024149,0,0.220591419119515,0|short_description=p4@Tm9sf1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:74140 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9DBU0 | |||
|association_with_transcript=0bp_to_ENSMUST00000122358,NM_028780,uc007tzt.1_5end | |||
|cluster_id=chr14:56262637..56262659,- | |||
|description=CAGE_peak_4_at_Tm9sf1_5end | |||
|id=chr14:56262637..56262659,- | |||
|ontology_enrichment_celltype=CL:0002563!7.90e-07!9;CL:0002251!7.90e-07!9;CL:0000066!9.55e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.91e-10,25;CL:0002563,6.35e-10,9;CL:0002251,6.35e-10,9;CL:0000223,3.86e-09,20;CL:0002076,1.80e-08,15;CL:0000239,7.67e-08,6;CL:0000677,7.67e-08,6;CL:0000584,7.67e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!6.73e-19!130;UBERON:0000925!6.73e-19!130;UBERON:0006595!6.73e-19!130;UBERON:0000160!7.05e-19!43;UBERON:0001007!5.08e-18!128;UBERON:0001555!5.08e-18!128;UBERON:0007026!5.08e-18!128;UBERON:0004921!7.51e-17!126;UBERON:0004185!7.51e-17!126;UBERON:0005409!5.72e-14!59;UBERON:0000344!2.49e-10!15;UBERON:0001242!4.44e-09!13;UBERON:0000060!4.44e-09!13;UBERON:0001262!4.44e-09!13;UBERON:0004786!4.44e-09!13;UBERON:0002108!3.91e-07!16;UBERON:0004923!5.04e-07!24;UBERON:0003350!7.90e-07!9;UBERON:0004808!7.90e-07!9;UBERON:0001277!7.90e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.70e-23,31;UBERON:0000344,1.84e-15,15;UBERON:0005409,7.67e-15,47;UBERON:0004119,4.11e-14,118;UBERON:0000925,4.11e-14,118;UBERON:0006595,4.11e-14,118;UBERON:0001242,1.77e-13,13;UBERON:0001262,1.77e-13,13;UBERON:0004786,1.77e-13,13;UBERON:0001007,4.04e-13,116;UBERON:0001555,4.04e-13,116;UBERON:0007026,4.04e-13,116;UBERON:0004921,7.90e-12,114;UBERON:0004923,5.98e-11,24;UBERON:0003350,6.35e-10,9;UBERON:0004808,6.35e-10,9;UBERON:0001277,6.35e-10,9;UBERON:0000485,1.40e-07,11;UBERON:0007023,3.24e-07,51 | |||
|phase1_expression=0.480446541314382,14.3079917132138,14.1049764210756,5.44435580352294,9.01612313903425,6.37941233265181,8.41005506143892,1.03298658753261,1.68946466582,1.63845168425395,0.513653904676515,0.638177271962691,0.513602189793617,1.31130603628496,0.666219523631325,0.404950534779652,0.699561878128147,0.946386496074713,0.548457734422955,0.84877930359606,1.02051948181284,0.794327609607082,0.261199789138935,4.7997726838022,6.42345986988076,9.76194338995534,8.18447792702242,5.817723282519,3.99049180858385,3.78045194639896,7.76056787293567,0,0,0,2.59966457776147,2.1610503896604,3.47087905646027,0.418531630736908,0,0,0,1.36609096991689,0.485510353031154,0.125896817975577,0.202753862439029,0.183546752161682,0.782391344348039,0.218025156380447,0.219686182734472,0.777719596297134,0.279972843250725,0,2.68452169692378,0,1.00828139742739,0.514518872071894,0.286533439938757,0.515672092277442,0,0,0,0.677689064138264,0.889294796111139,0.449949858640699,0,0.7104801149461,0,1.15265491596466,0,0.135005938331691,0.420649922702764,0,0.220868540951614,0.122490799214954,0.191690942036473,0,0,0,0,0,0.182975287204819,0,0.558365998002762,0,0,0,0.284743361598206,0,0.37863096666592,0,0.289864488701678,0.860423876981386,2.03991400112325,2.69851595818909,5.84798775702902,0.896053774194671,0.983110940922263,0.511290967734173,0,1.06001872353102,0.422530259330042,0,0,0,3.46385665617943,3.80039798212648,1.01104889002957,1.59857431606684,0.517875767294343,0.29688427812965,0.173485326766136,0.304465478312141,1.38369298353635,0.904335843315735,0.823120949949934,0.251333182659351,1.23597483867187,0.144599356919912,0.884610551949874,0.808834249737046,0,0.484875253135222,1.86391761218122,0,0,4.85368404896324,0.479260498023681,0,0.762421362438388,0,0,0.251308704225729,0,0,0.20778804455956,0,0.509196819251581,1.7416975885413,4.80173241023982,1.26265113531884,0.260240885925407,0,0,0.30140963567143,0,0.12811372028485,0.468508622798644,0.776110112217047,0,0.756424320671277,0.175951124163949,0.43839146485515,0.278047249225598,0.696504333044333,0.411564272815887,0.398068533636986,0.702213187313235,0.51469581422943,0,0.414251545071004,0,0.36012412292203,0,0,0.154267112887378,0.232533944750408,0,0,0.16455984991348,0.492502392237286,0.324275238183423,0.292399974850665,0.219550115291051,0,0.210289948564127,0.205809224758569,3.63460661282178,3.96675849995316,0.426576501070468,0,1.41754207454303,1.81515172161008,2.66853652613844,3.23383564391351,2.37264530772256,3.29397909448022,2.5133520880027,3.18330355265841,2.72949721966768,4.49409704327111,2.37751854862164,3.98282546508734,0.948339504765408,0.456994050438915,0,1.4255592949172,0.969762435838129,1.05203729835478,0.69560190836683,1.18088118383682,1.72698600625512,1.85095745882701,1.1858105083486,0.83422552858047,0.589676985339609,0.449724224769707,0.405720242777006,0.482354319504834,0.50925170356284,0.575392274901621,1.29708181420028,1.09824565275233,0,0.744281895337007,1.5601883655728,1.76805214562978,1.07638448113147,4.3419916922703,2.21703828199926,0.568474235311454,0.488894929326078,0.848725428875941,0.704070744865506,0.502518772325447,0.952174563544055,1.17080188714679,0.788175720530955,1.10732344824387,0.797273843287435,0.491589944147214,1.20879487306127,1.01254341007058,0,1.63171705145613,15.2446924635901,8.00216564283724,0.321101179975584,0.117211686592203,0,0.504941854408746,0.315508219416257,0.390438744296638,0.430846795465598,0,0,0,0.809621403349789,0,0,0,0.283880170416537,0.178065603667255,0.81443479676788,1.48473110675282,3.98235415019888,0.728341908464944,1.209294227859,2.82907619633847,1.18120757152309,0.922305443831782,1.29214146584111,1.81766864738753,2.13898427030833,1.58018378967908,2.10837217149998,2.06271086496374,0,0.36012218806262,1.03486947026204,0.643011105094777,0.886701168211368,1.24858172321449,0.987294123612726,0.913394847343798,2.11204537257339,1.69465656691056,4.85162475720916,0.32977250588296,0.645857706783622,0.241251699712623,0.596861720015682,0.656563598980245,4.08073171281791,0,0.170870880797853,0.206386867963223,0,0.565105371014073,0.410082683163076,0.228778173206523,0.339956859987711,0.839708713941948,0.829199842826543,0,0.158167996790568,0.813277868507395,0.432021363287205,0.418176592028937,1.31017538247707,0.674321731924103,0.743881101528023,1.30877970992015,2.20345454596048,4.34937519160848,2.25477175473676,0,0.165458490457098,0,0.258319646955462,0.506868376472335,0.469428954583016,0.2604087696879,0.209718688851422,0.966336483304024,0.288030006257865,0.316011120628178,1.01362607645082,0.616265742988964,0.389762468933385,0.716106782669926,0.39736270956253,0.600977247599844,0.443068581523732,0.302899349844443,0.15241361331,0.201652370273681,0.584747284438515,0,0,1.36038230169127,0.443971906748129,1.79427713218951,2.01461539636894,0.579568782096571,2.25218970541418,1.83151624267265,0.857473516316263,4.01257683228291,0,0.460325236507177,0,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0,0.341467211508268,0.486213434136588,0,0,0.44449345560323,0.618105171716683,0.64183841918363,0.252697211763798,0.25347929989024,0.754505365544305,0.37456602987953,0.384150914429216,0.34461281373368,0,0.695305955669133,0.964546102318525,1.23625770240992,0.735994600671987,0.685738504770831,0.70990322463735,0.715308569841963,0.726732083161643,0.564656282491984,0.592302255241736,0.365855945745545,0.789209134313529,0.679020569229309,0.561142271657738,0.355905054372522,0.0985044823755635,0,0.619747364743864,0.192906610981141,1.24905288968973,0.467863216890817,1.07435527024149,0,0.220591419119515,0 | |||
|short_description=p4@Tm9sf1 | |||
}} |
Revision as of 12:47, 4 August 2015
Short description: | p4@Tm9sf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tm9sf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 0bp_to_ENSMUST00000122358, NM_028780, uc007tzt.1_5end |
EntrezGene: | 74140 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.91e-10 | 25 |
intestinal epithelial cell | 6.35e-10 | 9 |
epithelial cell of alimentary canal | 6.35e-10 | 9 |
endodermal cell | 3.86e-09 | 20 |
endo-epithelial cell | 1.80e-08 | 15 |
brush border epithelial cell | 7.67e-08 | 6 |
gut absorptive cell | 7.67e-08 | 6 |
enterocyte | 7.67e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.70e-23 | 31 |
mucosa | 1.84e-15 | 15 |
gastrointestinal system | 7.67e-15 | 47 |
endoderm-derived structure | 4.11e-14 | 118 |
endoderm | 4.11e-14 | 118 |
presumptive endoderm | 4.11e-14 | 118 |
intestinal mucosa | 1.77e-13 | 13 |
wall of intestine | 1.77e-13 | 13 |
gastrointestinal system mucosa | 1.77e-13 | 13 |
digestive system | 4.04e-13 | 116 |
digestive tract | 4.04e-13 | 116 |
primitive gut | 4.04e-13 | 116 |
subdivision of digestive tract | 7.90e-12 | 114 |
organ component layer | 5.98e-11 | 24 |
epithelium of mucosa | 6.35e-10 | 9 |
gastrointestinal system epithelium | 6.35e-10 | 9 |
intestinal epithelium | 6.35e-10 | 9 |
simple columnar epithelium | 1.40e-07 | 11 |
adult organism | 3.24e-07 | 51 |