FFCP PHASE1:Mm9::chr1:132723236..132723242,+: Difference between revisions
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{{FFCP|EntrezGene=18703|HGNC=|MCL_coexpression_id=12|UniProt=O70570|association_with_transcript=-18bp_to_ENSMUST00000027675,NM_011082,uc011wrk.1_5end|description=CAGE_peak_3_at_Pigr_5end|id=chr1:132723236..132723242,+|ontology_enrichment_celltype=CL:0000066!8.46e-15!25;CL:0002563!3.39e-14!9;CL:0002251!3.39e-14!9;CL:0000223!1.43e-12!20;CL:0000239!9.62e-10!6;CL:0000677!9.62e-10!6;CL:0000212!9.62e-10!6;CL:0000584!9.62e-10!6;CL:0002076!3.35e-09!15;CL:0000075!3.31e-08!7|ontology_enrichment_celltype_v019_2=CL:0002563,1.67e-19,9;CL:0002251,1.67e-19,9;CL:0000066,4.93e-17,25;CL:0000223,1.35e-13,20;CL:0000239,3.53e-13,6;CL:0000677,3.53e-13,6;CL:0000584,3.53e-13,6;CL:0000075,3.42e-11,7;CL:0002076,5.48e-11,15;CL:0002250,6.60e-08,3;CL:0000682,8.58e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.44e-23!15;UBERON:0001242!1.03e-20!13;UBERON:0000060!1.03e-20!13;UBERON:0001262!1.03e-20!13;UBERON:0004786!1.03e-20!13;UBERON:0000160!1.88e-18!43;UBERON:0001007!1.02e-15!128;UBERON:0001555!1.02e-15!128;UBERON:0007026!1.02e-15!128;UBERON:0004119!2.76e-15!130;UBERON:0000925!2.76e-15!130;UBERON:0006595!2.76e-15!130;UBERON:0003350!3.39e-14!9;UBERON:0004808!3.39e-14!9;UBERON:0001277!3.39e-14!9;UBERON:0004921!5.10e-14!126;UBERON:0004185!5.10e-14!126;UBERON:0005409!7.47e-14!59;UBERON:0004923!4.97e-13!24;UBERON:0000485!3.29e-11!11;UBERON:0007023!5.63e-09!51|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.58e-35,31;UBERON:0000344,7.53e-33,15;UBERON:0001242,8.77e-29,13;UBERON:0001262,8.77e-29,13;UBERON:0004786,8.77e-29,13;UBERON:0005409,1.36e-23,47;UBERON:0003350,1.67e-19,9;UBERON:0004808,1.67e-19,9;UBERON:0001277,1.67e-19,9;UBERON:0004923,4.07e-19,24;UBERON:0000485,1.25e-15,11;UBERON:0001007,2.83e-13,116;UBERON:0001555,2.83e-13,116;UBERON:0007026,2.83e-13,116;UBERON:0004119,6.33e-13,118;UBERON:0000925,6.33e-13,118;UBERON:0006595,6.33e-13,118;UBERON:0004921,2.19e-11,114;UBERON:0002108,2.64e-10,4;UBERON:0000331,2.26e-08,3;UBERON:0002116,2.26e-08,3;UBERON:0001204,2.26e-08,3;UBERON:0001168,2.26e-08,3|phase1_expression=0,10.8182376368202,3.18499467572675,8.16653370528441,5.50985302940982,5.20425742926858,4.43864017131499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,9.11956809922418,5.04700418347774,8.03924749761028,7.75371593086335,9.26526300549323,14.8218267175972,18.146169342715,8.20402889424627,0,0,0,10.1098066912946,8.6442015586416,7.35009682544529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72084775396277,1.3599426674155,2.15881276655127,1.94932925234301,0.896053774194671,1.54488862144927,0,0,0,0,0,0,0,0.216491041011214,0,0,3.65388415100992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.31958806090611,0,0,10.4737392635522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.6852285622502,5.81791246659797,0,0,0,0,0,0.380451252225118,5.69434873853414,0,1.00534083520108,0.397912944082302,1.55971269695296,6.29173586057955,10.59076444386,12.7450414882795,0,0,0,0,0,0,0,0,0.156998727841375,0,2.07516838961004,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0.538192240565737,2.41221760681684,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0.172684981865896,0,0,0,5.4094070032094,1.37968373152366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0.824850614862677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661585194164886,0,0,0,0,0,6.12109756922687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26175594198403,9.85073797017626,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,1.31377732815827,2.93042598827624,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@Pigr}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18703 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O70570 | |||
|association_with_transcript=-18bp_to_ENSMUST00000027675,NM_011082,uc011wrk.1_5end | |||
|cluster_id=chr1:132723236..132723242,+ | |||
|description=CAGE_peak_3_at_Pigr_5end | |||
|id=chr1:132723236..132723242,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.46e-15!25;CL:0002563!3.39e-14!9;CL:0002251!3.39e-14!9;CL:0000223!1.43e-12!20;CL:0000239!9.62e-10!6;CL:0000677!9.62e-10!6;CL:0000212!9.62e-10!6;CL:0000584!9.62e-10!6;CL:0002076!3.35e-09!15;CL:0000075!3.31e-08!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.67e-19,9;CL:0002251,1.67e-19,9;CL:0000066,4.93e-17,25;CL:0000223,1.35e-13,20;CL:0000239,3.53e-13,6;CL:0000677,3.53e-13,6;CL:0000584,3.53e-13,6;CL:0000075,3.42e-11,7;CL:0002076,5.48e-11,15;CL:0002250,6.60e-08,3;CL:0000682,8.58e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.44e-23!15;UBERON:0001242!1.03e-20!13;UBERON:0000060!1.03e-20!13;UBERON:0001262!1.03e-20!13;UBERON:0004786!1.03e-20!13;UBERON:0000160!1.88e-18!43;UBERON:0001007!1.02e-15!128;UBERON:0001555!1.02e-15!128;UBERON:0007026!1.02e-15!128;UBERON:0004119!2.76e-15!130;UBERON:0000925!2.76e-15!130;UBERON:0006595!2.76e-15!130;UBERON:0003350!3.39e-14!9;UBERON:0004808!3.39e-14!9;UBERON:0001277!3.39e-14!9;UBERON:0004921!5.10e-14!126;UBERON:0004185!5.10e-14!126;UBERON:0005409!7.47e-14!59;UBERON:0004923!4.97e-13!24;UBERON:0000485!3.29e-11!11;UBERON:0007023!5.63e-09!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.58e-35,31;UBERON:0000344,7.53e-33,15;UBERON:0001242,8.77e-29,13;UBERON:0001262,8.77e-29,13;UBERON:0004786,8.77e-29,13;UBERON:0005409,1.36e-23,47;UBERON:0003350,1.67e-19,9;UBERON:0004808,1.67e-19,9;UBERON:0001277,1.67e-19,9;UBERON:0004923,4.07e-19,24;UBERON:0000485,1.25e-15,11;UBERON:0001007,2.83e-13,116;UBERON:0001555,2.83e-13,116;UBERON:0007026,2.83e-13,116;UBERON:0004119,6.33e-13,118;UBERON:0000925,6.33e-13,118;UBERON:0006595,6.33e-13,118;UBERON:0004921,2.19e-11,114;UBERON:0002108,2.64e-10,4;UBERON:0000331,2.26e-08,3;UBERON:0002116,2.26e-08,3;UBERON:0001204,2.26e-08,3;UBERON:0001168,2.26e-08,3 | |||
|phase1_expression=0,10.8182376368202,3.18499467572675,8.16653370528441,5.50985302940982,5.20425742926858,4.43864017131499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,9.11956809922418,5.04700418347774,8.03924749761028,7.75371593086335,9.26526300549323,14.8218267175972,18.146169342715,8.20402889424627,0,0,0,10.1098066912946,8.6442015586416,7.35009682544529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72084775396277,1.3599426674155,2.15881276655127,1.94932925234301,0.896053774194671,1.54488862144927,0,0,0,0,0,0,0,0.216491041011214,0,0,3.65388415100992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.31958806090611,0,0,10.4737392635522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.6852285622502,5.81791246659797,0,0,0,0,0,0.380451252225118,5.69434873853414,0,1.00534083520108,0.397912944082302,1.55971269695296,6.29173586057955,10.59076444386,12.7450414882795,0,0,0,0,0,0,0,0,0.156998727841375,0,2.07516838961004,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0.538192240565737,2.41221760681684,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0.172684981865896,0,0,0,5.4094070032094,1.37968373152366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0.824850614862677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661585194164886,0,0,0,0,0,6.12109756922687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26175594198403,9.85073797017626,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,1.31377732815827,2.93042598827624,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@Pigr | |||
}} |
Revision as of 17:49, 4 August 2015
Short description: | p3@Pigr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Pigr_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -18bp_to_ENSMUST00000027675, NM_011082, uc011wrk.1_5end |
EntrezGene: | 18703 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.67e-19 | 9 |
epithelial cell of alimentary canal | 1.67e-19 | 9 |
epithelial cell | 4.93e-17 | 25 |
endodermal cell | 1.35e-13 | 20 |
brush border epithelial cell | 3.53e-13 | 6 |
gut absorptive cell | 3.53e-13 | 6 |
enterocyte | 3.53e-13 | 6 |
columnar/cuboidal epithelial cell | 3.42e-11 | 7 |
endo-epithelial cell | 5.48e-11 | 15 |
intestinal crypt stem cell | 6.60e-08 | 3 |
M cell of gut | 8.58e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.58e-35 | 31 |
mucosa | 7.53e-33 | 15 |
intestinal mucosa | 8.77e-29 | 13 |
wall of intestine | 8.77e-29 | 13 |
gastrointestinal system mucosa | 8.77e-29 | 13 |
gastrointestinal system | 1.36e-23 | 47 |
epithelium of mucosa | 1.67e-19 | 9 |
gastrointestinal system epithelium | 1.67e-19 | 9 |
intestinal epithelium | 1.67e-19 | 9 |
organ component layer | 4.07e-19 | 24 |
simple columnar epithelium | 1.25e-15 | 11 |
digestive system | 2.83e-13 | 116 |
digestive tract | 2.83e-13 | 116 |
primitive gut | 2.83e-13 | 116 |
endoderm-derived structure | 6.33e-13 | 118 |
endoderm | 6.33e-13 | 118 |
presumptive endoderm | 6.33e-13 | 118 |
subdivision of digestive tract | 2.19e-11 | 114 |
small intestine | 2.64e-10 | 4 |
ileal mucosa | 2.26e-08 | 3 |
ileum | 2.26e-08 | 3 |
mucosa of small intestine | 2.26e-08 | 3 |
wall of small intestine | 2.26e-08 | 3 |