FFCP PHASE1:Mm9::chr1:133904131..133904168,+: Difference between revisions
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{{FFCP|EntrezGene=13714|HGNC=|UniProt=P41158|association_with_transcript=-13bp_to_NM_007923,uc007cob.1,uc007coc.1_5end|description=CAGE_peak_4_at_Elk4_5end|id=chr1:133904131..133904168,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000065!1.07e-08!41;UBERON:0001004!2.35e-08!42;UBERON:0005911!1.94e-07!69;UBERON:0004177!3.58e-07!29;UBERON:0006562!7.91e-07!24;UBERON:0001557!7.91e-07!24;UBERON:0001042!7.91e-07!24;UBERON:0008814!7.91e-07!24;UBERON:0009145!7.91e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000065,9.31e-09,41;UBERON:0001004,2.05e-08,42;UBERON:0005911,1.71e-07,69;UBERON:0004177,3.09e-07,29;UBERON:0005057,3.09e-07,29;UBERON:0001048,3.30e-07,134;UBERON:0000077,3.40e-07,35;UBERON:0001041,4.87e-07,80;UBERON:0006562,6.78e-07,24;UBERON:0001557,6.78e-07,24;UBERON:0001042,6.78e-07,24;UBERON:0008814,6.78e-07,24;UBERON:0009145,6.78e-07,24|phase1_expression=3.68342348341026,3.83872948403297,4.54999239389536,5.44435580352294,4.50806156951712,4.02910252588535,1.86890112476421,7.10178278928669,4.36445038670167,9.83071010552373,6.16384685611818,8.93448180747768,6.50562773738582,5.42006494997784,2.99798785634096,3.64455481301687,6.29605690315332,6.15151222448563,6.99283611389268,8.06340338416257,2.21112554392781,2.08510997521859,0.783599367416806,1.59992422793407,1.83527424853736,5.7423196411502,1.29228598847722,2.58565479223067,2.66032787238923,2.77233142735924,1.77384408524244,1.27006134691926,2.46025915033828,0,0.866554859253824,1.49611180822643,1.83752420636132,1.25559489221072,0,1.0470474879476,0,2.04913645487534,1.94204141212461,1.6366586336825,3.34543873024398,2.20256102594018,2.34717403304412,1.09012578190223,1.5378032791413,2.13872888981712,3.07970127575798,1.43752564364972,7.71799987865587,2.90144856804538,6.72187598284928,2.05807548828758,1.43266719969378,2.57836046138721,2.22548106945558,0.528990979272033,0,2.37191172448392,0.889294796111139,1.7997994345628,0.988866362566974,0.7104801149461,1.19840044207362,2.30530983192933,4.45865332926454,2.8351247049655,3.36519938162211,4.28476476605705,2.42955395046775,3.55223317723367,3.54628242767475,3.67687514644008,2.20231761998777,2.042997409363,2.4577045320999,1.45074916503213,2.01272815925301,1.04182674111352,1.11673199600552,3.93933827022176,1.22238598221448,0.883885756421003,2.70506193518296,3.16879057903011,6.89108359331975,3.70300644523249,3.18850937571846,0,2.03991400112325,4.31762553310254,1.29955283489534,3.58421509677868,3.65155492342555,2.55645483867087,2.59786004602869,3.18005617059306,5.35204995151386,1.28326477414318,0,0,1.08245520505607,2.02687892380079,2.02209778005913,2.74041311325744,5.69663344023778,3.71105347662062,2.60227990149204,0.913396434936424,3.22861696158482,1.65794904607885,3.52766121407114,2.51333182659351,3.21353458054686,3.32578520915797,6.19227386364912,4.52947179852746,4.19598885074748,4.84875253135222,1.86391761218122,3.51336956413857,3.14170060220183,2.81002760729451,3.23500836165985,2.99951365496704,1.90605340609597,2.99581278809645,3.66000482254901,3.5183218591602,3.65031072403781,2.30143911597297,1.24672826735736,2.59586020908412,7.33243419722277,4.35424397135326,3.79084137650512,3.57751155007006,2.34216797332867,2.98872735763515,2.70093194708024,2.26057226753573,4.76255494059295,3.20284300712124,4.12287588062807,2.32833033665114,1.5089759505299,2.83659120251729,2.11141348996739,4.60311038097907,2.50242524303038,4.87553033131033,3.90986059175093,3.18454826909589,1.40442637462647,0.51469581422943,1.70498099637356,2.07125772535502,1.64168241986767,2.34080679899319,3.55117103377815,1.77087808572663,3.08534225774756,1.62773761325285,2.14618721119695,3.26942958628075,5.26591519723137,4.43252153013557,4.13450928683864,3.36259971078264,3.07370161407471,3.75777972529041,2.73376933133365,3.2929475961371,2.31293148088659,2.11560453330835,1.91959425481711,2.55460339046482,2.70621668776396,2.01683524623343,2.66853652613844,1.33157938278791,1.42358718463353,2.63518327558417,2.5133520880027,1.59165177632921,1.75467678407208,2.69645822596266,2.16138049874694,2.19055400579804,4.93136542478012,4.22719496655997,2.25415471346161,3.05476991767971,1.74557238450863,5.04977903210294,3.54124607895841,3.39503340353085,2.98297582898612,2.71473760627961,4.74324203339438,3.67059232575407,3.73462090715086,3.37293168577281,3.85434230638156,3.13530307678142,0.50925170356284,3.16465751195892,5.99900339067631,1.09824565275233,4.31304619582064,3.72140947668503,3.43241440426017,4.2938409251009,2.51156378930677,4.3419916922703,5.17308932466493,3.22135400009824,4.56301934037672,2.03694102930226,3.52035372432753,5.86271901046355,4.76087281772027,7.02481132288076,4.57141917907954,6.42247599981447,5.89982644032702,5.73521601505083,4.66249451037918,6.36455857758651,4.52373851817817,1.63171705145613,1.96705709207614,3.31124095565679,3.53211297973142,2.22702204525186,3.77050374366353,5.04941854408746,3.47059041357882,4.29482618726302,3.66219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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:13714 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P41158 | |||
|association_with_transcript=-13bp_to_NM_007923,uc007cob.1,uc007coc.1_5end | |||
|cluster_id=chr1:133904131..133904168,+ | |||
|description=CAGE_peak_4_at_Elk4_5end | |||
|id=chr1:133904131..133904168,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000065!1.07e-08!41;UBERON:0001004!2.35e-08!42;UBERON:0005911!1.94e-07!69;UBERON:0004177!3.58e-07!29;UBERON:0006562!7.91e-07!24;UBERON:0001557!7.91e-07!24;UBERON:0001042!7.91e-07!24;UBERON:0008814!7.91e-07!24;UBERON:0009145!7.91e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000065,9.31e-09,41;UBERON:0001004,2.05e-08,42;UBERON:0005911,1.71e-07,69;UBERON:0004177,3.09e-07,29;UBERON:0005057,3.09e-07,29;UBERON:0001048,3.30e-07,134;UBERON:0000077,3.40e-07,35;UBERON:0001041,4.87e-07,80;UBERON:0006562,6.78e-07,24;UBERON:0001557,6.78e-07,24;UBERON:0001042,6.78e-07,24;UBERON:0008814,6.78e-07,24;UBERON:0009145,6.78e-07,24 | |||
|phase1_expression=3.68342348341026,3.83872948403297,4.54999239389536,5.44435580352294,4.50806156951712,4.02910252588535,1.86890112476421,7.10178278928669,4.36445038670167,9.83071010552373,6.16384685611818,8.93448180747768,6.50562773738582,5.42006494997784,2.99798785634096,3.64455481301687,6.29605690315332,6.15151222448563,6.99283611389268,8.06340338416257,2.21112554392781,2.08510997521859,0.783599367416806,1.59992422793407,1.83527424853736,5.7423196411502,1.29228598847722,2.58565479223067,2.66032787238923,2.77233142735924,1.77384408524244,1.27006134691926,2.46025915033828,0,0.866554859253824,1.49611180822643,1.83752420636132,1.25559489221072,0,1.0470474879476,0,2.04913645487534,1.94204141212461,1.6366586336825,3.34543873024398,2.20256102594018,2.34717403304412,1.09012578190223,1.5378032791413,2.13872888981712,3.07970127575798,1.43752564364972,7.71799987865587,2.90144856804538,6.72187598284928,2.05807548828758,1.43266719969378,2.57836046138721,2.22548106945558,0.528990979272033,0,2.37191172448392,0.889294796111139,1.7997994345628,0.988866362566974,0.7104801149461,1.19840044207362,2.30530983192933,4.45865332926454,2.8351247049655,3.36519938162211,4.28476476605705,2.42955395046775,3.55223317723367,3.54628242767475,3.67687514644008,2.20231761998777,2.042997409363,2.4577045320999,1.45074916503213,2.01272815925301,1.04182674111352,1.11673199600552,3.93933827022176,1.22238598221448,0.883885756421003,2.70506193518296,3.16879057903011,6.89108359331975,3.70300644523249,3.18850937571846,0,2.03991400112325,4.31762553310254,1.29955283489534,3.58421509677868,3.65155492342555,2.55645483867087,2.59786004602869,3.18005617059306,5.35204995151386,1.28326477414318,0,0,1.08245520505607,2.02687892380079,2.02209778005913,2.74041311325744,5.69663344023778,3.71105347662062,2.60227990149204,0.913396434936424,3.22861696158482,1.65794904607885,3.52766121407114,2.51333182659351,3.21353458054686,3.32578520915797,6.19227386364912,4.52947179852746,4.19598885074748,4.84875253135222,1.86391761218122,3.51336956413857,3.14170060220183,2.81002760729451,3.23500836165985,2.99951365496704,1.90605340609597,2.99581278809645,3.66000482254901,3.5183218591602,3.65031072403781,2.30143911597297,1.24672826735736,2.59586020908412,7.33243419722277,4.35424397135326,3.79084137650512,3.57751155007006,2.34216797332867,2.98872735763515,2.70093194708024,2.26057226753573,4.76255494059295,3.20284300712124,4.12287588062807,2.32833033665114,1.5089759505299,2.83659120251729,2.11141348996739,4.60311038097907,2.50242524303038,4.87553033131033,3.90986059175093,3.18454826909589,1.40442637462647,0.51469581422943,1.70498099637356,2.07125772535502,1.64168241986767,2.34080679899319,3.55117103377815,1.77087808572663,3.08534225774756,1.62773761325285,2.14618721119695,3.26942958628075,5.26591519723137,4.43252153013557,4.13450928683864,3.36259971078264,3.07370161407471,3.75777972529041,2.73376933133365,3.2929475961371,2.31293148088659,2.11560453330835,1.91959425481711,2.55460339046482,2.70621668776396,2.01683524623343,2.66853652613844,1.33157938278791,1.42358718463353,2.63518327558417,2.5133520880027,1.59165177632921,1.75467678407208,2.69645822596266,2.16138049874694,2.19055400579804,4.93136542478012,4.22719496655997,2.25415471346161,3.05476991767971,1.74557238450863,5.04977903210294,3.54124607895841,3.39503340353085,2.98297582898612,2.71473760627961,4.74324203339438,3.67059232575407,3.73462090715086,3.37293168577281,3.85434230638156,3.13530307678142,0.50925170356284,3.16465751195892,5.99900339067631,1.09824565275233,4.31304619582064,3.72140947668503,3.43241440426017,4.2938409251009,2.51156378930677,4.3419916922703,5.17308932466493,3.22135400009824,4.56301934037672,2.03694102930226,3.52035372432753,5.86271901046355,4.76087281772027,7.02481132288076,4.57141917907954,6.42247599981447,5.89982644032702,5.73521601505083,4.66249451037918,6.36455857758651,4.52373851817817,1.63171705145613,1.96705709207614,3.31124095565679,3.53211297973142,2.22702204525186,3.77050374366353,5.04941854408746,3.47059041357882,4.29482618726302,3.66219776145758,2.62865677747807,2.22798674082394,4.24614796183249,2.42886421004937,3.50707029493574,5.13874111330481,2.57057053137446,4.25820255624806,2.67098405500883,7.32991317091092,5.1140738121486,0,1.45668381692989,1.81394134178851,2.26326095707078,0.590603785761546,2.15204603560749,3.35956781118687,2.54473610634254,3.92147116223193,2.52829406348653,0,4.12542172992747,2.38307724027652,1.8006109403131,1.94038025674132,1.50035924522115,3.19212420556092,2.67553226403106,3.1264313914403,2.43571959291679,3.75474732901937,4.44847348814022,1.98475558249466,7.25499512942512,7.75029248140347,8.7453741145826,8.35606408021955,7.38634048852776,3.20628920292836,2.78137953015765,4.44264290074417,2.68302928352189,3.70389054739423,3.39063222608444,4.78429797023588,5.0331198105435,3.73952545986482,2.09927178485487,3.59319931891502,0.954670618015114,2.53068794864908,3.65975040828328,2.26811215725783,1.88179466413022,1.52853794622324,4.04593039154462,4.95920734352016,3.926339129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| |||
|short_description=p4@Elk4 | |||
}} |
Revision as of 18:46, 4 August 2015
Short description: | p4@Elk4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Elk4_5end |
Coexpression cluster: | NA |
Association with transcript: | -13bp_to_NM_007923, uc007cob.1, uc007coc.1_5end |
EntrezGene: | 13714 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory tract | 9.31e-09 | 41 |
respiratory system | 2.05e-08 | 42 |
endo-epithelium | 1.71e-07 | 69 |
hemopoietic organ | 3.09e-07 | 29 |
immune organ | 3.09e-07 | 29 |
primordium | 3.30e-07 | 134 |
mixed endoderm/mesoderm-derived structure | 3.40e-07 | 35 |
foregut | 4.87e-07 | 80 |
pharynx | 6.78e-07 | 24 |
upper respiratory tract | 6.78e-07 | 24 |
chordate pharynx | 6.78e-07 | 24 |
pharyngeal arch system | 6.78e-07 | 24 |
pharyngeal region of foregut | 6.78e-07 | 24 |