FFCP PHASE1:Mm9::chr18:38456480..38456491,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=56736|HGNC=|MCL_coexpression_id=709|UniProt=Q9JI90|association_with_transcript=21bp_to_ENSMUST00000171461,NM_001164621,uc008esh.2_5end|description=CAGE_peak_5_at_Rnf14_5end|id=chr18:38456480..38456491,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.98e-11,54;UBERON:0000955,1.10e-10,47;UBERON:0006238,1.10e-10,47;UBERON:0010314,5.01e-10,92;UBERON:0002616,7.59e-10,46;UBERON:0001049,2.61e-09,52;UBERON:0005068,2.61e-09,52;UBERON:0006241,2.61e-09,52;UBERON:0007135,2.61e-09,52;UBERON:0001017,3.52e-09,73;UBERON:0001016,9.25e-09,75;UBERON:0002950,3.62e-08,4;UBERON:0001891,3.62e-08,4;UBERON:0009616,3.62e-08,4;UBERON:0010286,3.62e-08,4;UBERON:0002346,1.70e-07,64;UBERON:0003075,1.70e-07,64;UBERON:0007284,1.70e-07,64;UBERON:0003080,4.76e-07,40;UBERON:0004121,5.25e-07,95;UBERON:0000924,5.25e-07,95;UBERON:0006601,5.25e-07,95|phase1_expression=1.28119077683835,0.348975407639361,0,0.30246421130683,0,0,0,0,0,0,0.171217968225505,0,0,0,0,0.404950534779652,0,0.157731082679119,0.411343300817216,0,2.8064285749853,0.496454756004426,0.261199789138935,0.159992422793407,0,0,0,0,0.190023419456374,0,0.221730510655305,0.635030673459631,0,0,0,0.332469290716985,0.204169356262369,2.09265815368454,1.5626706890476,1.0470474879476,2.94115744015507,0.683045484958446,2.42755176515577,0.251793635951155,0.202753862439029,0.183546752161682,0.782391344348039,0.218025156380447,0.219686182734472,0,0,0,0.671130424230945,0,0.672187598284928,0,0,0,0,0,0.633831403506179,0.338844532069132,0.889294796111139,0,0,0,0,0,0,0,0,0.285650984403804,0.662605622854841,0,0.0958454710182364,0,1.10115880999389,2.17068474744819,2.91852413186863,0.263772575460388,0.274462930807229,0,3.07101298901519,2.25105044012672,3.97275444219706,0.883885756421003,0.711858403995515,0.186399445825301,0.075726193333184,0.151143120213571,0.579728977403356,0.860423876981386,0,0,0,0,0.280888840263504,0,0.259786004602869,0,0.704217098883403,1.28326477414318,0,0,0,0.253359865475099,0,0.79928715803342,0.517875767294343,0.445326417194474,0.346970653532272,0,0.691846491768175,0.753613202763113,0.352766121407114,0.628332956648377,0,0.86759614151947,0,0.485300549842228,0.441683036920787,0.484875253135222,0,1.46390398505774,1.04723353406728,0,0.359445373517761,1.19980546198682,0,7.9389038884556,2.28750301409313,0.502617408451458,1.04294592115366,1.27857728665165,6.02585329222724,3.0825839982874,0.407357455401265,0.248813941220186,0.505445516867349,0.631325567659422,0.390361328888111,0,0,0,0.136072998302656,0.12811372028485,0,2.32833033665114,0.215567992932842,0.567318240503458,0,0,0.278047249225598,0,0.205782136407943,0.398068533636986,0,0.51469581422943,0.568326998791185,0.828503090142008,0.469052119962192,0.720248245844059,0,1.18058539048442,1.07986979021165,0.930135779001631,0.804820204198858,0.934122738937356,0.987359099480883,1.80584210487005,1.70244500046297,2.19299981137998,2.85415149878366,2.54992195644706,1.05144974282064,0,0,0,0.426576501070468,0,0.257734922644187,0.605050573870028,0.444756087689741,0.951128130562796,0,0,0,0.397912944082302,0.38992817423824,0,0.432276099749388,0.597423819763102,0.189667900953082,0.456994050438915,1.1270773567308,0.610953983535943,0.193952487167626,0.0701358198903186,0.442655759869801,0.442830443938806,1.41298855057237,1.23397163921801,0,0,0.786235980452812,0.224862112384854,0,0.241177159752417,0.50925170356284,0.287696137450811,0,0.274561413188081,0,0.372140947668503,0.936113019343682,0.252578877947112,0.179397413521912,0,0,0.189491411770485,0,0.509235257325564,0,0,0.238043640886014,0.390267295715598,0.157635144106191,0,0.318909537314974,0,0.172684981865896,0.144649058581512,0,0,0,0,5.45872005958493,4.57125577709592,0.327869890753351,1.26235463602186,0,0.390438744296638,0.215423397732799,0,0,0,0.404810701674894,0.292255857911312,0,1.28528526568723,0.425820255624806,0.35613120733451,0.162886959353576,0.329940245945071,0,0.242780636154981,0.302323556964751,0.943025398779491,0.590603785761546,0.307435147943927,0.516856586336442,0.727067458955011,1.06949213515416,0.316036757935816,0,0,2.04263763452273,0,0.388076051348264,0,0.177340233642274,0.178368817602071,1.31639216481697,1.522324745573,0,0.63549621259146,0.220528398054962,0.65954501176592,0.807322133479528,0.180938774784468,0.358117032009409,0.328281799490123,0.582961673259701,5.7481843623258,0.854354403989263,0.619160603889667,0,0.941842285023455,0.27338845544205,0.457556346413045,0.509935289981566,0.69975726161829,0.276399947608848,0.954670618015114,0,0,0.324016022465404,0.209088296014469,0,0.134864346384821,0.330613822901344,0.785267825952089,0.388844919875379,0.621339313086926,17.4744810992099,0.149516546043979,0.330916980914195,0.388902376688095,0,0.168956125490778,0.234714477291508,0.2604087696879,0.734015410979976,8.93861247056222,10.0810502190253,0,0,0,0.389762468933385,0.179026695667481,0,0.120195449519969,0,0.100966449948148,0.15241361331,0,0.194915761479505,0.0962118416403295,0,1.36038230169127,0,0.807424709485281,0,0.19318959403219,0.187682475451182,0.36630324853453,0,1.00314420807073,1.12950368523413,0.920650473014354,0.572895513439397,0.343706364687375,0,0.755393897389701,0,1.80128481289688,1.35942722695261,1.03552062350364,0.103787347584177,0,0,0.243106717068294,0,0.183843508450014,0.44449345560323,0.206035057238894,0,0,0.25347929989024,1.50901073108861,0.187283014939765,0.192075457214608,0.34461281373368,0.476293691283074,0.695305955669133,0.192909220463705,0,0.147198920134397,0.685738504770831,1.24233064311536,0.238436189947321,0.145346416632329,0.470546902076653,0.846146078916765,0.548783918618318,0.263069711437843,0.543216455383447,0,0.237270036248348,0.492522411877817,1.22769312950907,0.464810523557898,0,0.499621155875892,0.467863216890817,0.429742108096597,0.57386499620653,0.441182838239031,0.927471342481686|short_description=p5@Rnf14}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56736 | |||
|HGNC= | |||
|MCL_coexpression_id=709 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9JI90 | |||
|association_with_transcript=21bp_to_ENSMUST00000171461,NM_001164621,uc008esh.2_5end | |||
|cluster_id=chr18:38456480..38456491,+ | |||
|description=CAGE_peak_5_at_Rnf14_5end | |||
|id=chr18:38456480..38456491,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.98e-11,54;UBERON:0000955,1.10e-10,47;UBERON:0006238,1.10e-10,47;UBERON:0010314,5.01e-10,92;UBERON:0002616,7.59e-10,46;UBERON:0001049,2.61e-09,52;UBERON:0005068,2.61e-09,52;UBERON:0006241,2.61e-09,52;UBERON:0007135,2.61e-09,52;UBERON:0001017,3.52e-09,73;UBERON:0001016,9.25e-09,75;UBERON:0002950,3.62e-08,4;UBERON:0001891,3.62e-08,4;UBERON:0009616,3.62e-08,4;UBERON:0010286,3.62e-08,4;UBERON:0002346,1.70e-07,64;UBERON:0003075,1.70e-07,64;UBERON:0007284,1.70e-07,64;UBERON:0003080,4.76e-07,40;UBERON:0004121,5.25e-07,95;UBERON:0000924,5.25e-07,95;UBERON:0006601,5.25e-07,95 | |||
|phase1_expression=1.28119077683835,0.348975407639361,0,0.30246421130683,0,0,0,0,0,0,0.171217968225505,0,0,0,0,0.404950534779652,0,0.157731082679119,0.411343300817216,0,2.8064285749853,0.496454756004426,0.261199789138935,0.159992422793407,0,0,0,0,0.190023419456374,0,0.221730510655305,0.635030673459631,0,0,0,0.332469290716985,0.204169356262369,2.09265815368454,1.5626706890476,1.0470474879476,2.94115744015507,0.683045484958446,2.42755176515577,0.251793635951155,0.202753862439029,0.183546752161682,0.782391344348039,0.218025156380447,0.219686182734472,0,0,0,0.671130424230945,0,0.672187598284928,0,0,0,0,0,0.633831403506179,0.338844532069132,0.889294796111139,0,0,0,0,0,0,0,0,0.285650984403804,0.662605622854841,0,0.0958454710182364,0,1.10115880999389,2.17068474744819,2.91852413186863,0.263772575460388,0.274462930807229,0,3.07101298901519,2.25105044012672,3.97275444219706,0.883885756421003,0.711858403995515,0.186399445825301,0.075726193333184,0.151143120213571,0.579728977403356,0.860423876981386,0,0,0,0,0.280888840263504,0,0.259786004602869,0,0.704217098883403,1.28326477414318,0,0,0,0.253359865475099,0,0.79928715803342,0.517875767294343,0.445326417194474,0.346970653532272,0,0.691846491768175,0.753613202763113,0.352766121407114,0.628332956648377,0,0.86759614151947,0,0.485300549842228,0.441683036920787,0.484875253135222,0,1.46390398505774,1.04723353406728,0,0.359445373517761,1.19980546198682,0,7.9389038884556,2.28750301409313,0.502617408451458,1.04294592115366,1.27857728665165,6.02585329222724,3.0825839982874,0.407357455401265,0.248813941220186,0.505445516867349,0.631325567659422,0.390361328888111,0,0,0,0.136072998302656,0.12811372028485,0,2.32833033665114,0.215567992932842,0.567318240503458,0,0,0.278047249225598,0,0.205782136407943,0.398068533636986,0,0.51469581422943,0.568326998791185,0.828503090142008,0.469052119962192,0.720248245844059,0,1.18058539048442,1.07986979021165,0.930135779001631,0.804820204198858,0.934122738937356,0.987359099480883,1.80584210487005,1.70244500046297,2.19299981137998,2.85415149878366,2.54992195644706,1.05144974282064,0,0,0,0.426576501070468,0,0.257734922644187,0.605050573870028,0.444756087689741,0.951128130562796,0,0,0,0.397912944082302,0.38992817423824,0,0.432276099749388,0.597423819763102,0.189667900953082,0.456994050438915,1.1270773567308,0.610953983535943,0.193952487167626,0.0701358198903186,0.442655759869801,0.442830443938806,1.41298855057237,1.23397163921801,0,0,0.786235980452812,0.224862112384854,0,0.241177159752417,0.50925170356284,0.287696137450811,0,0.274561413188081,0,0.372140947668503,0.936113019343682,0.252578877947112,0.179397413521912,0,0,0.189491411770485,0,0.509235257325564,0,0,0.238043640886014,0.390267295715598,0.157635144106191,0,0.318909537314974,0,0.172684981865896,0.144649058581512,0,0,0,0,5.45872005958493,4.57125577709592,0.327869890753351,1.26235463602186,0,0.390438744296638,0.215423397732799,0,0,0,0.404810701674894,0.292255857911312,0,1.28528526568723,0.425820255624806,0.35613120733451,0.162886959353576,0.329940245945071,0,0.242780636154981,0.302323556964751,0.943025398779491,0.590603785761546,0.307435147943927,0.516856586336442,0.727067458955011,1.06949213515416,0.316036757935816,0,0,2.04263763452273,0,0.388076051348264,0,0.177340233642274,0.178368817602071,1.31639216481697,1.522324745573,0,0.63549621259146,0.220528398054962,0.65954501176592,0.807322133479528,0.180938774784468,0.358117032009409,0.328281799490123,0.582961673259701,5.7481843623258,0.854354403989263,0.619160603889667,0,0.941842285023455,0.27338845544205,0.457556346413045,0.509935289981566,0.69975726161829,0.276399947608848,0.954670618015114,0,0,0.324016022465404,0.209088296014469,0,0.134864346384821,0.330613822901344,0.785267825952089,0.388844919875379,0.621339313086926,17.4744810992099,0.149516546043979,0.330916980914195,0.388902376688095,0,0.168956125490778,0.234714477291508,0.2604087696879,0.734015410979976,8.93861247056222,10.0810502190253,0,0,0,0.389762468933385,0.179026695667481,0,0.120195449519969,0,0.100966449948148,0.15241361331,0,0.194915761479505,0.0962118416403295,0,1.36038230169127,0,0.807424709485281,0,0.19318959403219,0.187682475451182,0.36630324853453,0,1.00314420807073,1.12950368523413,0.920650473014354,0.572895513439397,0.343706364687375,0,0.755393897389701,0,1.80128481289688,1.35942722695261,1.03552062350364,0.103787347584177,0,0,0.243106717068294,0,0.183843508450014,0.44449345560323,0.206035057238894,0,0,0.25347929989024,1.50901073108861,0.187283014939765,0.192075457214608,0.34461281373368,0.476293691283074,0.695305955669133,0.192909220463705,0,0.147198920134397,0.685738504770831,1.24233064311536,0.238436189947321,0.145346416632329,0.470546902076653,0.846146078916765,0.548783918618318,0.263069711437843,0.543216455383447,0,0.237270036248348,0.492522411877817,1.22769312950907,0.464810523557898,0,0.499621155875892,0.467863216890817,0.429742108096597,0.57386499620653,0.441182838239031,0.927471342481686 | |||
|short_description=p5@Rnf14 | |||
}} |
Revision as of 18:33, 5 August 2015
Short description: | p5@Rnf14 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rnf14_5end |
Coexpression cluster: | MCL_coexpression_mm9:709 |
Association with transcript: | 21bp_to_ENSMUST00000171461, NM_001164621, uc008esh.2_5end |
EntrezGene: | 56736 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.98e-11 | 54 |
brain | 1.10e-10 | 47 |
future brain | 1.10e-10 | 47 |
structure with developmental contribution from neural crest | 5.01e-10 | 92 |
regional part of brain | 7.59e-10 | 46 |
neural tube | 2.61e-09 | 52 |
neural rod | 2.61e-09 | 52 |
future spinal cord | 2.61e-09 | 52 |
neural keel | 2.61e-09 | 52 |
central nervous system | 3.52e-09 | 73 |
nervous system | 9.25e-09 | 75 |
regional part of midbrain | 3.62e-08 | 4 |
midbrain | 3.62e-08 | 4 |
presumptive midbrain | 3.62e-08 | 4 |
midbrain neural tube | 3.62e-08 | 4 |
neurectoderm | 1.70e-07 | 64 |
neural plate | 1.70e-07 | 64 |
presumptive neural plate | 1.70e-07 | 64 |
anterior neural tube | 4.76e-07 | 40 |
ectoderm-derived structure | 5.25e-07 | 95 |
ectoderm | 5.25e-07 | 95 |
presumptive ectoderm | 5.25e-07 | 95 |