FFCP PHASE1:Mm9::chrX:5992843..5992848,+: Difference between revisions
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{{FFCP|EntrezGene=208431|HGNC=|MCL_coexpression_id=31|UniProt=E9PUX3|association_with_transcript=-11bp_to_ENSMUST00000143641_5end|description=CAGE_peak_12_at_Shroom4_5end|id=chrX:5992843..5992848,+|ontology_enrichment_celltype=CL:0000068!5.49e-12!3;CL:0002202!5.49e-12!3;CL:0000069!5.49e-12!3;CL:0002632!5.49e-12!3;CL:0002368!5.49e-12!3;CL:0000307!5.49e-12!3;CL:0000377!5.49e-12!3|ontology_enrichment_celltype_v019_2=CL:0000068,5.71e-11,3;CL:0002202,5.71e-11,3;CL:0000069,5.71e-11,3;CL:0002632,5.71e-11,3;CL:0002368,5.71e-11,3;CL:0000307,5.71e-11,3;CL:0000377,5.71e-11,3;CL:0000349,7.15e-11,3;CL:0000351,7.15e-11,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003126!5.49e-12!3;UBERON:0001005!5.49e-12!3;UBERON:0007196!5.49e-12!3;UBERON:0001558!5.49e-12!3;UBERON:0005631!5.96e-12!3;UBERON:0000478!5.96e-12!3;UBERON:0000158!5.96e-12!3;UBERON:0005795!7.88e-09!4;UBERON:0000995!7.88e-09!4;UBERON:0001987!1.63e-08!2;UBERON:0003124!1.63e-08!2;UBERON:0004340!1.63e-08!2;UBERON:0003975!3.85e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0001987,6.78e-16,2;UBERON:0003124,6.78e-16,2;UBERON:0004340,6.78e-16,2;UBERON:0005631,4.56e-11,3;UBERON:0000478,4.56e-11,3;UBERON:0000158,4.56e-11,3;UBERON:0003126,5.71e-11,3;UBERON:0001005,5.71e-11,3;UBERON:0007196,5.71e-11,3;UBERON:0001558,5.71e-11,3;UBERON:0000358,7.15e-11,3;UBERON:0000307,7.15e-11,3;UBERON:0007010,7.15e-11,3;UBERON:0005795,1.23e-08,4;UBERON:0000995,1.23e-08,4;UBERON:0003975,3.64e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865964164044856,1.52015919285059,0.505524445014783,0,0,0.29688427812965,0,0,0,0.150722640552623,0.23517741427141,0,0.741584903203122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0.585400943573396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469343416127421,4.44847348814022,0,0,0,0,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0.116876902181569,0,0,0.717710852875806,1.51096154727671,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p12@Shroom4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:208431 | |||
|HGNC= | |||
|MCL_coexpression_id=31 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9PUX3 | |||
|association_with_transcript=-11bp_to_ENSMUST00000143641_5end | |||
|cluster_id=chrX:5992843..5992848,+ | |||
|description=CAGE_peak_12_at_Shroom4_5end | |||
|id=chrX:5992843..5992848,+ | |||
|ontology_enrichment_celltype=CL:0000068!5.49e-12!3;CL:0002202!5.49e-12!3;CL:0000069!5.49e-12!3;CL:0002632!5.49e-12!3;CL:0002368!5.49e-12!3;CL:0000307!5.49e-12!3;CL:0000377!5.49e-12!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,5.71e-11,3;CL:0002202,5.71e-11,3;CL:0000069,5.71e-11,3;CL:0002632,5.71e-11,3;CL:0002368,5.71e-11,3;CL:0000307,5.71e-11,3;CL:0000377,5.71e-11,3;CL:0000349,7.15e-11,3;CL:0000351,7.15e-11,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003126!5.49e-12!3;UBERON:0001005!5.49e-12!3;UBERON:0007196!5.49e-12!3;UBERON:0001558!5.49e-12!3;UBERON:0005631!5.96e-12!3;UBERON:0000478!5.96e-12!3;UBERON:0000158!5.96e-12!3;UBERON:0005795!7.88e-09!4;UBERON:0000995!7.88e-09!4;UBERON:0001987!1.63e-08!2;UBERON:0003124!1.63e-08!2;UBERON:0004340!1.63e-08!2;UBERON:0003975!3.85e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001987,6.78e-16,2;UBERON:0003124,6.78e-16,2;UBERON:0004340,6.78e-16,2;UBERON:0005631,4.56e-11,3;UBERON:0000478,4.56e-11,3;UBERON:0000158,4.56e-11,3;UBERON:0003126,5.71e-11,3;UBERON:0001005,5.71e-11,3;UBERON:0007196,5.71e-11,3;UBERON:0001558,5.71e-11,3;UBERON:0000358,7.15e-11,3;UBERON:0000307,7.15e-11,3;UBERON:0007010,7.15e-11,3;UBERON:0005795,1.23e-08,4;UBERON:0000995,1.23e-08,4;UBERON:0003975,3.64e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865964164044856,1.52015919285059,0.505524445014783,0,0,0.29688427812965,0,0,0,0.150722640552623,0.23517741427141,0,0.741584903203122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0.585400943573396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469343416127421,4.44847348814022,0,0,0,0,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0.116876902181569,0,0,0.717710852875806,1.51096154727671,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@Shroom4 | |||
}} |
Revision as of 09:09, 6 August 2015
Short description: | p12@Shroom4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_Shroom4_5end |
Coexpression cluster: | MCL_coexpression_mm9:31 |
Association with transcript: | -11bp_to_ENSMUST00000143641_5end |
EntrezGene: | 208431 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 5.71e-11 | 3 |
epithelial cell of tracheobronchial tree | 5.71e-11 | 3 |
branched duct epithelial cell | 5.71e-11 | 3 |
epithelial cell of lower respiratory tract | 5.71e-11 | 3 |
respiratory epithelial cell | 5.71e-11 | 3 |
tracheal epithelial cell | 5.71e-11 | 3 |
tracheoblast | 5.71e-11 | 3 |
extraembryonic cell | 7.15e-11 | 3 |
trophoblast cell | 7.15e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
placenta | 6.78e-16 | 2 |
chorion | 6.78e-16 | 2 |
allantois | 6.78e-16 | 2 |
extraembryonic membrane | 4.56e-11 | 3 |
extraembryonic structure | 4.56e-11 | 3 |
membranous layer | 4.56e-11 | 3 |
trachea | 5.71e-11 | 3 |
respiratory airway | 5.71e-11 | 3 |
tracheobronchial tree | 5.71e-11 | 3 |
lower respiratory tract | 5.71e-11 | 3 |
blastocyst | 7.15e-11 | 3 |
blastula | 7.15e-11 | 3 |
cleaving embryo | 7.15e-11 | 3 |
embryonic uterus | 1.23e-08 | 4 |
uterus | 1.23e-08 | 4 |
internal female genitalia | 3.64e-07 | 5 |