FFCP PHASE1:Hg19::chr17:618043..618107,-: Difference between revisions
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=55275 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=25608 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q5VIR6,G3V0H8,B3KS06 | ||
|association_with_transcript=0bp_to_ENST00000291074,ENST00000437048,ENST00000446250,NM_001128159,NM_018289,uc002frl.2,uc002frm.2,uc002frn.2,uc002fro.2,uc010cjo.1,uc010cjp.1_5end | |association_with_transcript=0bp_to_ENST00000291074,ENST00000437048,ENST00000446250,NM_001128159,NM_018289,uc002frl.2,uc002frm.2,uc002frn.2,uc002fro.2,uc010cjo.1,uc010cjp.1_5end | ||
|cluster_id=chr17:618043..618107,- | |cluster_id=chr17:618043..618107,- | ||
Latest revision as of 18:01, 16 September 2015
| Short description: | p1@VPS53 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_VPS53_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000291074, ENST00000437048, ENST00000446250, NM_001128159, NM_018289, uc002frl.2, uc002frm.2, uc002frn.2, uc002fro.2, uc010cjo.1, uc010cjp.1_5end |
| EntrezGene: | VPS53 |
| HGNC: | 25608 |
| UniProt: | Q5VIR6G3V0H8B3KS06 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@VPS53 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 3.88e-21 | 114 |
| neural tube | 1.01e-18 | 56 |
| neural rod | 1.01e-18 | 56 |
| future spinal cord | 1.01e-18 | 56 |
| neural keel | 1.01e-18 | 56 |
| regional part of nervous system | 1.61e-18 | 53 |
| regional part of brain | 1.61e-18 | 53 |
| brain | 4.52e-18 | 68 |
| future brain | 4.52e-18 | 68 |
| central nervous system | 1.07e-15 | 81 |
Showing 1 to 10 of 35 entries
