FFCP PHASE2:Hg19::chr17:71161140..71161174,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:6752 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:11331 |TSSclas...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=6752 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=11331 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P30874 | ||
|association_with_transcript=0bp_to_ENST00000357585,NM_001050,uc002jje.2_5end | |association_with_transcript=0bp_to_ENST00000357585,NM_001050,uc002jje.2_5end | ||
|cluster_id=chr17:71161140..71161174,+ | |cluster_id=chr17:71161140..71161174,+ | ||
Latest revision as of 05:03, 17 September 2015
| Short description: | p1@SSTR2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_SSTR2_5end |
| Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
| Association with transcript: | 0bp_to_ENST00000357585, NM_001050, uc002jje.2_5end |
| EntrezGene: | SSTR2 |
| HGNC: | 11331 |
| UniProt: | P30874 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@SSTR2 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| defensive cell | 9.86e-11 | 48 |
| phagocyte | 9.86e-11 | 48 |
| classical monocyte | 1.10e-10 | 42 |
| CD14-positive, CD16-negative classical monocyte | 1.10e-10 | 42 |
| neural cell | 1.54e-07 | 25 |
| neuronal stem cell | 3.65e-07 | 8 |
| monopoietic cell | 9.53e-07 | 59 |
| monocyte | 9.53e-07 | 59 |
| monoblast | 9.53e-07 | 59 |
| promonocyte | 9.53e-07 | 59 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 4.51e-55 | 81 |
| nervous system | 6.82e-54 | 89 |
| adult organism | 1.11e-44 | 114 |
| brain | 1.38e-44 | 68 |
| future brain | 1.38e-44 | 68 |
| neural tube | 5.99e-41 | 56 |
| neural rod | 5.99e-41 | 56 |
| future spinal cord | 5.99e-41 | 56 |
| neural keel | 5.99e-41 | 56 |
| regional part of nervous system | 1.07e-38 | 53 |
Showing 1 to 10 of 60 entries
