FFCP PHASE1:Hg19::chr7:150945865..150945896,-: Difference between revisions
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=6604 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=11108 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 06:12, 17 September 2015
| Short description: | p4@SMARCD3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_SMARCD3_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -94bp_to_ENST00000472988_5end |
| EntrezGene: | SMARCD3 |
| HGNC: | 11108 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@SMARCD3 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| muscle precursor cell | 3.40e-19 | 58 |
| myoblast | 3.40e-19 | 58 |
| multi-potent skeletal muscle stem cell | 3.40e-19 | 58 |
| muscle cell | 1.11e-17 | 55 |
| vascular associated smooth muscle cell | 5.17e-17 | 32 |
| smooth muscle cell | 2.22e-16 | 43 |
| smooth muscle myoblast | 2.22e-16 | 43 |
| electrically responsive cell | 2.63e-16 | 61 |
| electrically active cell | 2.63e-16 | 61 |
| smooth muscle cell of the umbilical artery | 4.21e-08 | 4 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| skeletal muscle tissue | 2.83e-24 | 62 |
| striated muscle tissue | 2.83e-24 | 62 |
| myotome | 2.83e-24 | 62 |
| muscle tissue | 3.59e-23 | 64 |
| musculature | 3.59e-23 | 64 |
| musculature of body | 3.59e-23 | 64 |
| dense mesenchyme tissue | 5.29e-23 | 73 |
| somite | 1.62e-22 | 71 |
| presomitic mesoderm | 1.62e-22 | 71 |
| presumptive segmental plate | 1.62e-22 | 71 |
Showing 1 to 10 of 57 entries
