FFCP PHASE2:Hg19::chr3:195270131..195270160,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:5504 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:9288 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=5504 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=9288 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=E7EMN6 | ||
|association_with_transcript=15bp_to_ENST00000438848_5end | |association_with_transcript=15bp_to_ENST00000438848_5end | ||
|cluster_id=chr3:195270131..195270160,- | |cluster_id=chr3:195270131..195270160,- | ||
Latest revision as of 14:03, 17 September 2015
| Short description: | p1@PPP1R2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_PPP1R2_5end |
| Coexpression cluster: | C175_Eosinophils_Neutrophils_CD4_Basophils_CD19_CD8_Natural |
| Association with transcript: | 15bp_to_ENST00000438848_5end |
| EntrezGene: | PPP1R2 |
| HGNC: | 9288 |
| UniProt: | E7EMN6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@PPP1R2 |
|---|
0
50
100
150
200
250
300
350
400
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| leukocyte | 3.69e-42 | 136 |
| nongranular leukocyte | 1.92e-32 | 115 |
| hematopoietic lineage restricted progenitor cell | 3.93e-30 | 120 |
| hematopoietic stem cell | 3.30e-26 | 168 |
| hematopoietic oligopotent progenitor cell | 1.53e-23 | 161 |
| hematopoietic multipotent progenitor cell | 1.53e-23 | 161 |
| myeloid leukocyte | 3.79e-22 | 72 |
| hematopoietic cell | 1.21e-21 | 177 |
| classical monocyte | 1.52e-20 | 42 |
| CD14-positive, CD16-negative classical monocyte | 1.52e-20 | 42 |
Showing 1 to 10 of 33 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 3.90e-18 | 98 |
| blood island | 3.90e-18 | 98 |
| hemolymphoid system | 1.30e-17 | 108 |
| immune system | 2.78e-14 | 93 |
| bone marrow | 1.20e-13 | 76 |
| bone element | 2.80e-12 | 82 |
| skeletal element | 2.81e-11 | 90 |
| skeletal system | 9.93e-09 | 100 |
Showing 1 to 8 of 8 entries
