FFCP PHASE2:Hg19::chr14:107083690..107083722,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene= |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript |HGNC=HGNC:5654 |TSSclassifier=...") |
No edit summary |
||
| Line 4: | Line 4: | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC= | |HGNC=5654 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 22:52, 18 September 2015
| Short description: | p1@IGHV4-59 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_IGHV4-59_5end |
| Coexpression cluster: | C218_tonsil_lymph_CD19_spleen_colon_appendix_salivary |
| Association with transcript: | 2bp_to_ENST00000455737_5end |
| EntrezGene: | NA |
| HGNC: | 5654 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@IGHV4-59 |
|---|
0
2
4
6
8
10
12
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| B cell | 1.73e-48 | 14 |
| lymphocyte of B lineage | 1.88e-27 | 24 |
| pro-B cell | 1.88e-27 | 24 |
| lymphoid lineage restricted progenitor cell | 1.41e-11 | 52 |
| lymphocyte | 2.54e-11 | 53 |
| common lymphoid progenitor | 2.54e-11 | 53 |
Showing 1 to 6 of 6 entries
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 9.90e-19 | 114 |
| major salivary gland | 2.00e-13 | 2 |
| saliva-secreting gland | 1.33e-09 | 6 |
| gland of oral region | 1.33e-09 | 6 |
| gland of foregut | 1.33e-09 | 6 |
| oral gland | 1.33e-09 | 6 |
| oral cavity | 1.33e-09 | 6 |
| tonsil | 9.91e-08 | 1 |
| mucosa-associated lymphoid tissue | 9.91e-08 | 1 |
| lymphoid tissue | 9.91e-08 | 1 |
Showing 1 to 10 of 20 entries
