FFCP PHASE2:Hg19::chr1:20617362..20617380,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:127731 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:26538 |TSScl...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=127731 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=26538 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=E7EM39,E7EM40,Q5TIE3,E9PMB3 | ||
|association_with_transcript=-31bp_to_ENST00000289815,ENST00000289825,ENST00000375083,ENST00000375089,ENST00000485375,NM_001039500,uc001bdd.2,uc009vps.2,uc010odc.1_5end | |association_with_transcript=-31bp_to_ENST00000289815,ENST00000289825,ENST00000375083,ENST00000375089,ENST00000485375,NM_001039500,uc001bdd.2,uc009vps.2,uc010odc.1_5end | ||
|cluster_id=chr1:20617362..20617380,+ | |cluster_id=chr1:20617362..20617380,+ | ||
Latest revision as of 04:19, 20 September 2015
| Short description: | p1@VWA5B1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_VWA5B1_5end |
| Coexpression cluster: | C160_medulla_Hepatocyte_retina_corpus_liver_pineal_cerebral |
| Association with transcript: | -31bp_to_ENST00000289815, ENST00000289825, ENST00000375083, ENST00000375089, ENST00000485375, NM_001039500, uc001bdd.2, uc009vps.2, uc010odc.1_5end |
| EntrezGene: | VWA5B1 |
| HGNC: | 26538 |
| UniProt: | E7EM39E7EM40Q5TIE3E9PMB3 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@VWA5B1 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| pituitary gland | 1.64e-40 | 2 |
| brainstem | 1.38e-30 | 6 |
| regional part of nervous system | 3.25e-29 | 53 |
| regional part of brain | 3.25e-29 | 53 |
| medulla oblongata | 8.12e-28 | 3 |
| myelencephalon | 8.12e-28 | 3 |
| future myelencephalon | 8.12e-28 | 3 |
| neural tube | 1.15e-27 | 56 |
| neural rod | 1.15e-27 | 56 |
| future spinal cord | 1.15e-27 | 56 |
Showing 1 to 10 of 86 entries
