Personal tools

MacroAPE 1083:ZN589 f1

From FANTOM5_SSTAR

Revision as of 13:56, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: ZN589_f1

Motif matrix
POACGT
12.54280821917807486.2414383561643864.597602739726021.618150684931505
20.92465753424657452.87671232876711979.3493150684931551.849315068493155
33.80136986301370471.8493150684931559.3493150684931550.0
40.07.52.7739726027397254.7260273972602755
56.6780821917808260.02.7739726027397255.54794520547945
65.7534246575342390.07.3972602739726051.849315068493155
75.6506849315068451.952054794520550.07.397260273972605
88.5273972602739650.00.06.472602739726035
97.3972602739726054.72602739726027552.87671232876711970.0
101.9520547945205512.123287671232880.92465753424657450.0
112.77397260273972510.376712328767121.8493150684931550.0
120.05.6506849315068456.57534246575343052.773972602739725
131.8493150684931552.7739726027397250.92465753424657459.452054794520551
140.01.8493150684931557.55.650684931506845
150.01.952054794520559.2465753424657453.8013698630137047
162.5684931506849352.5684931506849357.29452054794520952.568493150684935

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Spz1#MA0111.1-23.12316e-050.01486620.029693511CGGCAGTAACCGTGGGGCTGTTACCCT-
dl_1#MA0022.100.002995531.425870.62634712CGGCAGTAACCGTGGGCGGAAAAACCCC-
ARO80#MA0273.100.003001371.428650.62634716CGGCAGTAACCGTGGGACATACTTGCCGAGAATTATC-
ovo#MA0126.1-40.003779661.799120.6263479CGGCAGTAACCGTGGGAGTAACAGT+
prd#MA0239.1-40.003779661.799120.6263479CGGCAGTAACCGTGGGAGTAACAGT+
Pax4#MA0068.130.003952741.88150.62634716CGGCAGTAACCGTGGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
En1#MA0027.100.00521972.484580.70817611CGGCAGTAACCGTGGGAAGTAGTGCCC+
TFAP2A#MA0003.1-80.005958862.836420.7081768CGGCAGTAACCGTGGGCCCCCGGGC-
Kr#MA0452.1-60.008296393.949080.87642510CGGCAGTAACCGTGGGTAACCCTTTTG-
myb.Ph3#MA0054.1-60.01125395.356840.885769CGGCAGTAACCGTGGGTAACCGTTT+
TBP#MA0108.200.01211135.764990.8857615CGGCAGTAACCGTGGGGTATAAAAGGCGGGG+
TBP#MA0108.200.01211135.764990.8857615CGGCAGTAACCGTGGGGTATAAAAGGCGGGG+
EBF1#MA0154.1-80.01705548.118370.9986918CGGCAGTAACCGTGGGTCCCTTGGGT-
Ar#MA0007.1-10.01799058.563460.99869115CGGCAGTAACCGTGGGGGCGGGTACACGATGTTCTTAT-
REB1#MA0363.1-50.02026049.643940.9986919CGGCAGTAACCGTGGGGTTACCCGG+
YGR067C#MA0425.1-40.02032399.674190.99869112CGGCAGTAACCGTGGGTGAAAAAGTGGGGT-