Personal tools

MCL coexpression mm9:50

From FANTOM5_SSTAR

Revision as of 12:36, 11 October 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126667740..126667746,-p@chr10:126667740..126667746
-
Mm9::chr10:126908865..126908875,+p@chr10:126908865..126908875
+
Mm9::chr10:126908884..126908893,+p@chr10:126908884..126908893
+
Mm9::chr10:127032561..127032587,-p@chr10:127032561..127032587
-
Mm9::chr10:18551620..18551631,-p1@uc007emw.2
p1@uc011xao.1
p1@uc011xap.1
p1@uc011xaq.1
p1@uc011xar.1
p1@uc011xas.1
p1@uc011xat.1
p1@uc011xau.1
p1@uc011xav.1
p1@uc011xaw.1
Mm9::chr10:5033969..5034010,+p@chr10:5033969..5034010
+
Mm9::chr10:94608435..94608449,-p@chr10:94608435..94608449
-
Mm9::chr10:94608462..94608481,-p@chr10:94608462..94608481
-
Mm9::chr10:94727585..94727595,-p@chr10:94727585..94727595
-
Mm9::chr10:94727600..94727621,-p@chr10:94727600..94727621
-
Mm9::chr10:94785613..94785619,-p10@Cradd
Mm9::chr10:94877828..94877854,-p3@Socs2
Mm9::chr10:94877919..94877931,-p12@Socs2
Mm9::chr10:94878131..94878145,-p15@Socs2
Mm9::chr10:94879733..94879744,-p26@Socs2
Mm9::chr10:94879884..94879903,-p13@Socs2
Mm9::chr11:102641572..102641574,-p@chr11:102641572..102641574
-
Mm9::chr11:106549972..106549979,+p@chr11:106549972..106549979
+
Mm9::chr11:106549980..106549990,+p@chr11:106549980..106549990
+
Mm9::chr11:115773377..115773390,+p6@1110017F19Rik
Mm9::chr11:116613638..116613664,+p1@ENSMUST00000145570
Mm9::chr11:11773217..11773268,-p@chr11:11773217..11773268
-
Mm9::chr11:118995104..118995116,-p@chr11:118995104..118995116
-
Mm9::chr11:119113603..119113633,-p@chr11:119113603..119113633
-
Mm9::chr11:44434652..44434683,+p@chr11:44434652..44434683
+
Mm9::chr11:60956190..60956198,+p4@Tnfrsf13b
Mm9::chr11:78864833..78864849,+p@chr11:78864833..78864849
+
Mm9::chr11:95609708..95609715,+p@chr11:95609708..95609715
+
Mm9::chr11:95609863..95609870,+p7@Zfp652
Mm9::chr12:106257741..106257767,+p@chr12:106257741..106257767
+
Mm9::chr12:114720527..114720536,-p@chr12:114720527..114720536
-
Mm9::chr12:114720537..114720551,-p@chr12:114720537..114720551
-
Mm9::chr12:114720564..114720570,-p@chr12:114720564..114720570
-
Mm9::chr12:114720582..114720589,-p@chr12:114720582..114720589
-
Mm9::chr12:114720620..114720627,-p@chr12:114720620..114720627
-
Mm9::chr12:114720632..114720643,-p@chr12:114720632..114720643
-
Mm9::chr12:114720656..114720681,-p@chr12:114720656..114720681
-
Mm9::chr12:114720684..114720694,-p@chr12:114720684..114720694
-
Mm9::chr12:114720700..114720718,-p@chr12:114720700..114720718
-
Mm9::chr12:116003106..116003122,-p1@ENSMUST00000103508
Mm9::chr12:12498679..12498684,-p@chr12:12498679..12498684
-
Mm9::chr12:12499649..12499687,-p@chr12:12499649..12499687
-
Mm9::chr12:12944076..12944087,-p@chr12:12944076..12944087
-
Mm9::chr12:12944787..12944795,-p@chr12:12944787..12944795
-
Mm9::chr12:12945058..12945061,-p@chr12:12945058..12945061
-
Mm9::chr12:12947182..12947194,-p3@Mycn
Mm9::chr12:12947199..12947213,-p2@Mycn
Mm9::chr12:12947406..12947418,-p5@Mycn
Mm9::chr12:12948633..12948651,-p1@Mycn
Mm9::chr12:57390214..57390221,+p@chr12:57390214..57390221
+
Mm9::chr12:78153821..78153834,-p@chr12:78153821..78153834
-
Mm9::chr12:78153837..78153854,-p@chr12:78153837..78153854
-
Mm9::chr12:78161298..78161306,+p@chr12:78161298..78161306
+
Mm9::chr12:78278733..78278736,+p@chr12:78278733..78278736
+
Mm9::chr12:78292709..78292711,-p@chr12:78292709..78292711
-
Mm9::chr12:80081730..80081741,-p11@Tmem229b
Mm9::chr12:87383737..87383759,-p@chr12:87383737..87383759
-
Mm9::chr12:89112518..89112523,+p1@Gm2016
Mm9::chr12:89491309..89491316,-p@chr12:89491309..89491316
-
Mm9::chr12:99845023..99845028,-p@chr12:99845023..99845028
-
Mm9::chr13:19302183..19302199,+p1@uc007pos.2
Mm9::chr13:19306149..19306152,+p@chr13:19306149..19306152
+
Mm9::chr13:19396857..19396862,-p@chr13:19396857..19396862
-
Mm9::chr13:19398171..19398185,-p@chr13:19398171..19398185
-
Mm9::chr13:19399237..19399245,-p@chr13:19399237..19399245
-
Mm9::chr13:19399729..19399760,-p@chr13:19399729..19399760
-
Mm9::chr13:19399903..19399908,-p@chr13:19399903..19399908
-
Mm9::chr13:19400390..19400403,-p@chr13:19400390..19400403
-
Mm9::chr13:19403154..19403161,-p1@ENSMUST00000103562
Mm9::chr13:19403177..19403195,-p1@uc007pou.1
Mm9::chr13:19403293..19403304,-p3@uc007pou.1
Mm9::chr13:19403316..19403325,-p5@uc007pou.1
Mm9::chr13:19403350..19403367,-p2@uc007pou.1
Mm9::chr13:19403420..19403435,-p4@uc007pou.1
Mm9::chr13:19428429..19428439,+p@chr13:19428429..19428439
+
Mm9::chr13:19433561..19433567,+p8@uc007poy.1
p8@uc007poz.1
Mm9::chr13:19433571..19433578,-p@chr13:19433571..19433578
-
Mm9::chr13:19433634..19433640,+p7@uc007poy.1
p7@uc007poz.1
Mm9::chr13:19433685..19433696,+p6@uc007poy.1
p6@uc007poz.1
Mm9::chr13:19433749..19433774,+p5@uc007poy.1
p5@uc007poz.1
Mm9::chr13:19433797..19433810,+p4@uc007poy.1
p4@uc007poz.1
Mm9::chr13:19433812..19433830,+p3@uc007poy.1
p3@uc007poz.1
Mm9::chr13:19433834..19433856,+p2@uc007poy.1
p2@uc007poz.1
Mm9::chr13:19433950..19434011,+p1@uc007poy.1
p1@uc007poz.1
Mm9::chr13:19434023..19434030,+p1@ENSMUST00000103565
Mm9::chr13:19437638..19437668,-p@chr13:19437638..19437668
-
Mm9::chr13:19437825..19437836,+p@chr13:19437825..19437836
+
Mm9::chr13:19438955..19438959,+p@chr13:19438955..19438959
+
Mm9::chr13:19444217..19444235,+p@chr13:19444217..19444235
+
Mm9::chr13:19444275..19444291,+p@chr13:19444275..19444291
+
Mm9::chr13:19448045..19448051,-p@chr13:19448045..19448051
-
Mm9::chr13:19450481..19450493,-p@chr13:19450481..19450493
-
Mm9::chr13:24468037..24468066,+p7@Cmah
Mm9::chr13:33651550..33651559,-p@chr13:33651550..33651559
-
Mm9::chr13:33661179..33661193,-p1@uc007qaj.1
Mm9::chr13:33661349..33661365,-p2@uc007qaj.1
Mm9::chr13:45078162..45078171,-p@chr13:45078162..45078171
-
Mm9::chr13:45078182..45078211,-p@chr13:45078182..45078211
-
Mm9::chr13:45078216..45078227,-p4@Dtnbp1
Mm9::chr13:56238537..56238549,-p@chr13:56238537..56238549
-
Mm9::chr13:56239959..56239993,-p@chr13:56239959..56239993
-
Mm9::chr14:115876807..115876822,-p@chr14:115876807..115876822
-
Mm9::chr14:115876833..115876838,-p@chr14:115876833..115876838
-
Mm9::chr14:115876862..115876869,-p@chr14:115876862..115876869
-
Mm9::chr14:54741550..54741579,+p@chr14:54741550..54741579
+
Mm9::chr14:54741582..54741598,+p@chr14:54741582..54741598
+
Mm9::chr14:54741600..54741611,+p@chr14:54741600..54741611
+
Mm9::chr14:54741712..54741715,+p@chr14:54741712..54741715
+
Mm9::chr14:54741836..54741859,+p2@ENSMUST00000103681
Mm9::chr14:54741865..54741903,+p1@ENSMUST00000103681
Mm9::chr14:54742798..54742834,+p1@ENSMUST00000103682
Mm9::chr14:62217063..62217078,+p3@Trim13
Mm9::chr14:62217079..62217089,+p5@Trim13
Mm9::chr14:62217101..62217123,+p4@Trim13
Mm9::chr15:36809609..36809639,-p1@Gm10384
Mm9::chr15:5187465..5187476,+p@chr15:5187465..5187476
+
Mm9::chr15:63479445..63479459,-p@chr15:63479445..63479459
-
Mm9::chr15:77994061..77994075,+p@chr15:77994061..77994075
+
Mm9::chr16:13423815..13423836,-p@chr16:13423815..13423836
-
Mm9::chr16:31940911..31940935,+p@chr16:31940911..31940935
+
Mm9::chr16:32179924..32179936,+p3@Bex6
Mm9::chr16:32179940..32179943,+p4@Bex6
Mm9::chr16:32550321..32550355,+p@chr16:32550321..32550355
+
Mm9::chr16:32551902..32551906,+p@chr16:32551902..32551906
+
Mm9::chr16:48790316..48790325,+p@chr16:48790316..48790325
+
Mm9::chr16:48790351..48790368,+p@chr16:48790351..48790368
+
Mm9::chr16:48790382..48790394,+p@chr16:48790382..48790394
+
Mm9::chr16:49768904..49768915,-p@chr16:49768904..49768915
-
Mm9::chr16:49783552..49783559,-p@chr16:49783552..49783559
-
Mm9::chr16:49843158..49843168,+p@chr16:49843158..49843168
+
Mm9::chr16:50044351..50044371,+p@chr16:50044351..50044371
+
Mm9::chr16:50046356..50046364,-p@chr16:50046356..50046364
-
Mm9::chr16:50046396..50046407,-p@chr16:50046396..50046407
-
Mm9::chr16:50169071..50169073,-p@chr16:50169071..50169073
-
Mm9::chr16:97936789..97936793,+p@chr16:97936789..97936793
+
Mm9::chr17:12918263..12918287,-p@chr17:12918263..12918287
-
Mm9::chr17:12933444..12933474,-p@chr17:12933444..12933474
-
Mm9::chr17:24117529..24117549,-p@chr17:24117529..24117549
-
Mm9::chr17:31345742..31345750,-p@chr17:31345742..31345750
-
Mm9::chr17:31345758..31345780,-p@chr17:31345758..31345780
-
Mm9::chr17:35166822..35166834,-p9@Msh5
Mm9::chr17:47570381..47570405,-p@chr17:47570381..47570405
-
Mm9::chr17:51574861..51574868,+p@chr17:51574861..51574868
+
Mm9::chr17:51619016..51619018,+p@chr17:51619016..51619018
+
Mm9::chr17:5404075..5404082,+p@chr17:5404075..5404082
+
Mm9::chr17:5406632..5406664,-p@chr17:5406632..5406664
-
Mm9::chr17:84174968..84174977,+p@chr17:84174968..84174977
+
Mm9::chr17:84174996..84175007,+p@chr17:84174996..84175007
+
Mm9::chr18:12391228..12391240,-p@chr18:12391228..12391240
-
Mm9::chr18:15352977..15352992,+p@chr18:15352977..15352992
+
Mm9::chr18:4239209..4239218,-p@chr18:4239209..4239218
-
Mm9::chr18:4239246..4239252,-p@chr18:4239246..4239252
-
Mm9::chr18:50190950..50190978,+p11@Tnfaip8
Mm9::chr18:82124214..82124223,-p@chr18:82124214..82124223
-
Mm9::chr18:82124376..82124379,-p@chr18:82124376..82124379
-
Mm9::chr18:82124383..82124401,-p@chr18:82124383..82124401
-
Mm9::chr19:45666488..45666494,-p10@Fbxw4
Mm9::chr1:122344054..122344059,-p@chr1:122344054..122344059
-
Mm9::chr1:122346251..122346255,-p@chr1:122346251..122346255
-
Mm9::chr1:138157493..138157508,-p1@Gpr25
Mm9::chr1:155261357..155261363,-p2@E330020D12Rik
Mm9::chr1:173489429..173489436,+p6@Cd244
p6@LOC677008
Mm9::chr1:183807491..183807499,+p@chr1:183807491..183807499
+
Mm9::chr1:36823915..36823940,+p@chr1:36823915..36823940
+
Mm9::chr1:38722437..38722444,-p@chr1:38722437..38722444
-
Mm9::chr1:40523139..40523147,+p11@Il18r1
Mm9::chr1:89774737..89774758,+p@chr1:89774737..89774758
+
Mm9::chr1:89774760..89774773,+p@chr1:89774760..89774773
+
Mm9::chr2:107796180..107796200,+p@chr2:107796180..107796200
+
Mm9::chr2:149109339..149109343,+p@chr2:149109339..149109343
+
Mm9::chr2:24849905..24849914,+p@chr2:24849905..24849914
+
Mm9::chr2:25050326..25050340,+p@chr2:25050326..25050340
+
Mm9::chr2:89757123..89757126,+p@chr2:89757123..89757126
+
Mm9::chr3:105735583..105735597,-p3@I830077J02Rik
Mm9::chr3:105735605..105735629,-p2@I830077J02Rik
Mm9::chr3:135257325..135257364,-p11@Nfkb1
Mm9::chr3:135257370..135257389,-p9@Nfkb1
Mm9::chr3:153757054..153757064,-p@chr3:153757054..153757064
-
Mm9::chr3:153757095..153757106,-p@chr3:153757095..153757106
-
Mm9::chr3:51464275..51464286,+p5@Mgst2
Mm9::chr3:51464294..51464297,+p9@Mgst2
Mm9::chr3:51464300..51464317,+p3@Mgst2
Mm9::chr3:51464318..51464328,+p6@Mgst2
Mm9::chr3:51569471..51569482,+p@chr3:51569471..51569482
+
Mm9::chr3:51569583..51569617,+p@chr3:51569583..51569617
+
Mm9::chr3:51592569..51592576,-p@chr3:51592569..51592576
-
Mm9::chr3:51593047..51593051,-p@chr3:51593047..51593051
-
Mm9::chr3:58885082..58885098,+p@chr3:58885082..58885098
+
Mm9::chr3:98403542..98403551,+p@chr3:98403542..98403551
+
Mm9::chr4:63328639..63328666,+p@chr4:63328639..63328666
+
Mm9::chr4:63329107..63329110,+p@chr4:63329107..63329110
+
Mm9::chr5:101033214..101033248,-p@chr5:101033214..101033248
-
Mm9::chr5:119011113..119011137,+p@chr5:119011113..119011137
+
Mm9::chr5:137041573..137041594,-p9@Cux1
Mm9::chr5:137169466..137169482,+p3@Myl10
Mm9::chr5:137169484..137169512,+p1@Myl10
Mm9::chr5:137169527..137169532,+p6@Myl10
Mm9::chr5:137169537..137169553,+p4@Myl10
Mm9::chr5:137169991..137170004,+p5@Myl10
Mm9::chr5:137170013..137170019,+p8@Myl10
Mm9::chr5:140650755..140650767,-p6@Mad1l1
Mm9::chr5:148230207..148230213,+p3@D5Ertd605e
Mm9::chr5:148230222..148230235,+p2@D5Ertd605e
Mm9::chr5:148243168..148243174,+p@chr5:148243168..148243174
+
Mm9::chr5:25259398..25259413,+p@chr5:25259398..25259413
+
Mm9::chr5:25265805..25265862,+p1@Actr3b
Mm9::chr5:34977506..34977533,-p6@Mfsd10
Mm9::chr5:34977534..34977582,-p4@Mfsd10
Mm9::chr5:34977602..34977607,-p14@Mfsd10
Mm9::chr5:88955521..88955531,-p3@Igj
Mm9::chr6:126827315..126827348,-p@chr6:126827315..126827348
-
Mm9::chr6:127975758..127975805,-p@chr6:127975758..127975805
-
Mm9::chr6:128986539..128986544,+p@chr6:128986539..128986544
+
Mm9::chr6:128986690..128986700,+p@chr6:128986690..128986700
+
Mm9::chr6:136397971..136397984,-p@chr6:136397971..136397984
-
Mm9::chr6:3473934..3473942,+p@chr6:3473934..3473942
+
Mm9::chr6:41005900..41005926,+p2@uc009bnr.2
Mm9::chr6:50344254..50344276,-p@chr6:50344254..50344276
-
Mm9::chr6:67326141..67326165,-p1@Il12rb2
Mm9::chr7:108912031..108912038,+p9@Clpb
Mm9::chr7:118172279..118172299,+p6@Ctr9
Mm9::chr7:118172521..118172532,+p3@Ctr9
Mm9::chr7:121441048..121441055,+p@chr7:121441048..121441055
+
Mm9::chr7:123407769..123407779,-p@chr7:123407769..123407779
-
Mm9::chr7:123407788..123407794,-p@chr7:123407788..123407794
-
Mm9::chr7:143460560..143460569,+p@chr7:143460560..143460569
+
Mm9::chr7:147389677..147389687,+p@chr7:147389677..147389687
+
Mm9::chr7:147433049..147433074,+p2@5830411N06Rik
Mm9::chr7:147433166..147433213,+p1@5830411N06Rik
Mm9::chr7:147433215..147433218,+p3@5830411N06Rik
Mm9::chr7:31947116..31947124,+p1@uc009gih.1
Mm9::chr7:53176200..53176253,-p4@Emp3
Mm9::chr7:53927754..53927768,-p2@Tph1
Mm9::chr7:53927869..53927876,-p7@Tph1
Mm9::chr7:53927924..53927929,-p8@Tph1
Mm9::chr7:54440427..54440431,-p@chr7:54440427..54440431
-
Mm9::chr7:54508220..54508231,-p1@Mrgpra9
Mm9::chr7:54508234..54508243,-p3@Mrgpra9
Mm9::chr7:54508244..54508253,-p2@Mrgpra9
Mm9::chr7:54508286..54508293,-p4@Mrgpra9
Mm9::chr7:54508323..54508332,-p5@Mrgpra9
Mm9::chr7:71041363..71041385,+p@chr7:71041363..71041385
+
Mm9::chr8:111136113..111136131,+p@chr8:111136113..111136131
+
Mm9::chr8:111136158..111136178,+p@chr8:111136158..111136178
+
Mm9::chr8:120832956..120832960,-p@chr8:120832956..120832960
-
Mm9::chr8:120989644..120989651,-p@chr8:120989644..120989651
-
Mm9::chr8:120994553..120994580,+p@chr8:120994553..120994580
+
Mm9::chr8:47938010..47938016,+p@chr8:47938010..47938016
+
Mm9::chr8:47938021..47938032,+p@chr8:47938021..47938032
+
Mm9::chr8:47938089..47938098,+p@chr8:47938089..47938098
+
Mm9::chr8:47938120..47938136,+p@chr8:47938120..47938136
+
Mm9::chr8:75907290..75907299,+p@chr8:75907290..75907299
+
Mm9::chr8:80213112..80213131,-p@chr8:80213112..80213131
-
Mm9::chr8:80268433..80268440,+p@chr8:80268433..80268440
+
Mm9::chr8:82919013..82919018,-p@chr8:82919013..82919018
-
Mm9::chr8:82919076..82919091,-p@chr8:82919076..82919091
-
Mm9::chr8:82919113..82919127,-p@chr8:82919113..82919127
-
Mm9::chr8:97544570..97544583,-p@chr8:97544570..97544583
-
Mm9::chr8:97544890..97544900,-p@chr8:97544890..97544900
-
Mm9::chr8:97544907..97544916,-p@chr8:97544907..97544916
-
Mm9::chr8:97580583..97580596,+p@chr8:97580583..97580596
+
Mm9::chr8:98927758..98927772,-p@chr8:98927758..98927772
-
Mm9::chr8:98927780..98927792,-p@chr8:98927780..98927792
-
Mm9::chr8:98927800..98927805,-p@chr8:98927800..98927805
-
Mm9::chr9:103328915..103328936,+p@chr9:103328915..103328936
+
Mm9::chr9:107817306..107817339,+p@chr9:107817306..107817339
+
Mm9::chr9:108007192..108007203,-p@chr9:108007192..108007203
-
Mm9::chr9:123626658..123626692,-p1@Lztfl1
Mm9::chr9:37363199..37363213,+p@chr9:37363199..37363213
+
Mm9::chr9:37363222..37363228,+p@chr9:37363222..37363228
+
Mm9::chr9:37363230..37363241,+p@chr9:37363230..37363241
+
Mm9::chr9:45660823..45660839,+p4@Bace1
Mm9::chr9:57282744..57282760,-p@chr9:57282744..57282760
-
Mm9::chrX:46221673..46221717,-p@chrX:46221673..46221717
-
Mm9::chrX:46223591..46223601,+p@chrX:46223591..46223601
+
Mm9::chrX:46225177..46225184,+p@chrX:46225177..46225184
+
Mm9::chrX:46225223..46225228,+p@chrX:46225223..46225228
+
Mm9::chrX:46238123..46238135,+p@chrX:46238123..46238135
+
Mm9::chrX:46238194..46238206,+p@chrX:46238194..46238206
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:50&oldid=2149336"