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MCL coexpression mm9:1558

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:17157561..17157640,+p1@C1d
Mm9::chr5:101001211..101001230,-p1@Plac8
Mm9::chr7:121419556..121419616,-p1@Psma1
Mm9::chr9:65974560..65974588,+p3@Fam96a
Mm9::chr9:65974605..65974639,+p2@Fam96a


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
gastrointestinal system1.34e-1847
digestive system2.24e-18116
digestive tract2.24e-18116
primitive gut2.24e-18116
endoderm-derived structure2.44e-18118
endoderm2.44e-18118
presumptive endoderm2.44e-18118
subdivision of digestive tract3.30e-17114
intestine1.27e-1431
organ component layer2.65e-1024
mucosa1.38e-0915
intestinal mucosa2.27e-0813
anatomical wall2.27e-0813
wall of intestine2.27e-0813
gastrointestinal system mucosa2.27e-0813
gut epithelium1.26e-0755
unilaminar epithelium1.84e-0766


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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