NonredundantMotifs:83

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known83
• db :HOCOMOCO
• Id :RARG_do
• name  :
• score :0.4986598336095242
  
• External refs:

EntrezGene:5916
UniProt:5916

• Internal refs:

EntrezGene:5916

Motif matrix

P0 A C G T 1 4.956896551724147 2.4784482758620734 12.392241379310343 4.2025862068965605 2 5.064655172413792 3.663793103448264 11.314655172413797 3.9870689655172464 3 7.866379310344824 0.9698275862068956 11.314655172413797 3.8793103448275774 4 0.0 0.9698275862068956 18.53448275862068 4.525862068965519 5 1.0775862068965525 4.633620689655164 10.452586206896543 7.866379310344824 6 5.495689655172419 1.9396551724137938 4.956896551724147 11.637931034482756 7 2.6939655172413874 13.038793103448262 4.741379310344834 3.556034482758619 8 12.715517241379303 3.0172413793103465 7.219827586206907 1.0775862068965525 9 5.280172413793106 8.081896551724137 7.866379310344824 2.801724137931032 10 4.0948275862068915 15.301724137931044 2.6939655172413874 1.9396551724137938 11 5.603448275862064 7.543103448275866 7.004310344827592 3.8793103448275774 12 11.853448275862071 3.124999999999991 6.46551724137932 2.586206896551718 13 8.728448275862055 5.926724137931023 9.374999999999998 0.0 14 20.150862068965523 0.0 3.0172413793103465 0.8620689655172411 15 0.0 0.0 24.0301724137931 0.0 16 0.0 0.0 16.91810344827586 7.112068965517238 17 4.4181034482758506 0.0 0.0 19.61206896551725 18 2.0474137931034484 20.366379310344836 1.6163793103448276 0.0 19 22.952586206896555 1.0775862068965525 0.0 0.0 20 6.815732758620697 8.2165948275862 7.785560344827597 1.2122844827586194