Personal tools

UBERON:0004347

From FANTOM5_SSTAR

Revision as of 17:20, 15 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:limb bud
Definition:"the mesenchymal outgrowth on the lateral trunk of the embryo that develops into the limbs[MP]." [MP:0005650, Wikipedia:Limb_bud]
Xrefs:
links:

AAO:0010375
BTO:0001640
GAID:1307
MESH:A.16.254.462
ncithesaurus:Limb_Bud

XAO:0003161
Synonyms: "limb buds" EXACT PLURAL []
"limbbud" EXACT [GO:0060174]
Comments:induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004357(paired limb/fin bud)
develops_from:UBERON:0005733(limb field)



Children

is a:UBERON:0005417 (forelimb bud),UBERON:0005418 (hindlimb bud)
develops from:UBERON:0002101 (limb),UBERON:0010130 (autopod plate)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004347 (limb bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_2b70fa7aa129c6b1ae994f78b59895b0p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_2b70fa7aa129c6b1ae994f78b59895b0p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_2b70fa7aa129c6b1ae994f78b59895b0p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_2b70fa7aa129c6b1ae994f78b59895b0p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_2b70fa7aa129c6b1ae994f78b59895b0p@chr10:97176812..97176813, +
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_4e40f97ba5019b2926d94b53c38c28f4p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_4e40f97ba5019b2926d94b53c38c28f4p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_4e40f97ba5019b2926d94b53c38c28f4p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_4e40f97ba5019b2926d94b53c38c28f4p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_4e40f97ba5019b2926d94b53c38c28f4p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_4e40f97ba5019b2926d94b53c38c28f4p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_4e40f97ba5019b2926d94b53c38c28f4p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_4e40f97ba5019b2926d94b53c38c28f4p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_4e40f97ba5019b2926d94b53c38c28f4p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_4e40f97ba5019b2926d94b53c38c28f4p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_4e40f97ba5019b2926d94b53c38c28f4p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_4e40f97ba5019b2926d94b53c38c28f4p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_4e40f97ba5019b2926d94b53c38c28f4p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_4e40f97ba5019b2926d94b53c38c28f4p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_4e40f97ba5019b2926d94b53c38c28f4p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_4e40f97ba5019b2926d94b53c38c28f4p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_4e40f97ba5019b2926d94b53c38c28f4p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_4e40f97ba5019b2926d94b53c38c28f4p@chr13:51335579..51335582, +
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_1c1f84dfd582b5d978eec6a804d8846ep73@XIRP2
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_1c1f84dfd582b5d978eec6a804d8846ep73@XIRP2
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_1c1f84dfd582b5d978eec6a804d8846ep38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr2:152590465..152590472, -
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_1c1f84dfd582b5d978eec6a804d8846ep@chr2:152590465..152590472, -
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_1c1f84dfd582b5d978eec6a804d8846ep27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_1c1f84dfd582b5d978eec6a804d8846ep@chr21:47769234..47769239, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004347&oldid=1833080"