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Coexpression cluster:C118

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Full id: C118_cerebellum_parietal_occipital_medial_middle_frontal_insula



Phase1 CAGE Peaks

Hg19::chr10:105037220..105037227,+p12@INA
Hg19::chr10:18689498..18689550,+p6@CACNB2
Hg19::chr10:24911746..24911793,-p6@ARHGAP21
Hg19::chr10:25463662..25463680,+p1@GPR158
Hg19::chr10:25463691..25463702,+p5@GPR158
Hg19::chr10:25463726..25463735,+p6@GPR158
Hg19::chr10:62149714..62149724,-p34@ANK3
Hg19::chr10:65281549..65281566,-p@chr10:65281549..65281566
-
Hg19::chr11:105480715..105480735,+p6@GRIA4
Hg19::chr11:105480793..105480845,+p3@GRIA4
Hg19::chr11:119019778..119019795,+p2@ABCG4
Hg19::chr11:132714823..132714843,-p@chr11:132714823..132714843
-
Hg19::chr11:132813716..132813736,-p14@OPCML
Hg19::chr11:17172291..17172318,-p@chr11:17172291..17172318
-
Hg19::chr11:17756279..17756367,+p1@KCNC1
Hg19::chr11:47616210..47616237,-p4@C1QTNF4
Hg19::chr11:66025938..66025957,+p9@KLC2
Hg19::chr11:66790693..66790733,+p2@SYT12
Hg19::chr11:94134581..94134594,-p1@GPR83
Hg19::chr12:100378459..100378530,-p6@ANKS1B
Hg19::chr12:108523053..108523101,+p1@WSCD2
Hg19::chr12:108525551..108525568,+p4@WSCD2
Hg19::chr12:119419159..119419192,+p5@SRRM4
Hg19::chr12:132904597..132904617,+p@chr12:132904597..132904617
+
Hg19::chr12:132906118..132906180,-p1@GALNT9
Hg19::chr12:3601977..3601990,-p1@uc001qmd.1
Hg19::chr12:52214727..52214749,-p@chr12:52214727..52214749
-
Hg19::chr13:103054704..103054731,-p2@FGF14-IT1
Hg19::chr14:24047796..24047818,-p10@JPH4
Hg19::chr14:27067258..27067276,-p3@NOVA1
Hg19::chr15:31658288..31658338,+p4@KLF13
Hg19::chr15:31658340..31658347,+p34@KLF13
Hg19::chr15:37391438..37391479,+p1@ENST00000559509
Hg19::chr15:40650463..40650527,+p1@DISP2
Hg19::chr16:31004138..31004144,+p@chr16:31004138..31004144
+
Hg19::chr16:330675..330686,+p3@PDIA2
p4@ARHGDIG
Hg19::chr16:6069299..6069316,+p18@RBFOX1
Hg19::chr16:6069333..6069361,+p10@RBFOX1
Hg19::chr16:6069840..6069851,+p31@RBFOX1
Hg19::chr16:87636569..87636577,+p6@JPH3
Hg19::chr17:19314532..19314563,+p1@RNF112
Hg19::chr17:2658922..2658963,+p@chr17:2658922..2658963
+
Hg19::chr17:43319081..43319146,-p1@AK096807
Hg19::chr17:48207115..48207152,-p4@SAMD14
Hg19::chr17:50235163..50235180,-p16@CA10
Hg19::chr17:50235879..50235899,-p14@CA10
Hg19::chr17:50237348..50237373,-p5@CA10
Hg19::chr17:50237374..50237388,-p9@CA10
Hg19::chr17:72857858..72857869,-p@chr17:72857858..72857869
-
Hg19::chr17:7452189..7452207,+p3@TNFSF12-TNFSF13
p3@TNFSF12
Hg19::chr17:77090555..77090587,-p@chr17:77090555..77090587
-
Hg19::chr17:79373129..79373161,+p3@BAHCC1
Hg19::chr17:80656875..80656912,+p@chr17:80656875..80656912
+
Hg19::chr18:3874247..3874262,-p9@DLGAP1
Hg19::chr18:3874271..3874337,-p3@DLGAP1
Hg19::chr18:44336896..44336907,+p@chr18:44336896..44336907
+
Hg19::chr19:13106465..13106477,+p27@NFIX
Hg19::chr19:13616887..13616912,-p10@CACNA1A
Hg19::chr19:13617037..13617069,-p4@CACNA1A
Hg19::chr19:13618233..13618292,-p@chr19:13618233..13618292
-
Hg19::chr19:30019801..30019814,+p@chr19:30019801..30019814
+
Hg19::chr19:3987889..3987898,-p@chr19:3987889..3987898
-
Hg19::chr19:41036371..41036417,+p1@SPTBN4
Hg19::chr19:42817511..42817522,+p6@TMEM145
Hg19::chr19:42817550..42817569,+p3@TMEM145
Hg19::chr19:44139537..44139540,+p@chr19:44139537..44139540
+
Hg19::chr1:11714458..11714482,+p2@FBXO44
Hg19::chr1:174768671..174768682,+p29@RABGAP1L
Hg19::chr1:174769436..174769459,+p15@RABGAP1L
Hg19::chr1:205414261..205414293,-p@chr1:205414261..205414293
-
Hg19::chr1:2398876..2398928,+p1@PLCH2
Hg19::chr1:244211767..244211800,+p@chr1:244211767..244211800
+
Hg19::chr20:10289444..10289460,+p@chr20:10289444..10289460
+
Hg19::chr20:3767547..3767623,+p4@CDC25B
Hg19::chr20:3767689..3767696,+p8@CDC25B
Hg19::chr20:44036054..44036086,-p1@AK098015
Hg19::chr20:44937047..44937095,-p1@CDH22
Hg19::chr20:44937096..44937105,-p7@CDH22
Hg19::chr20:45980455..45980466,-p24@ZMYND8
Hg19::chr20:9819653..9819663,-p5@PAK7
Hg19::chr22:18958039..18958055,+p2@DGCR5
Hg19::chr22:37099555..37099599,-p2@CACNG2
Hg19::chr22:51066685..51066719,+p@chr22:51066685..51066719
+
Hg19::chr2:100721281..100721307,-p5@AFF3
Hg19::chr2:152830428..152830439,-p7@CACNB4
Hg19::chr2:152830441..152830472,-p2@CACNB4
Hg19::chr2:152830479..152830503,-p3@CACNB4
Hg19::chr2:155553962..155553969,+p@chr2:155553962..155553969
+
Hg19::chr2:155554040..155554063,+p@chr2:155554040..155554063
+
Hg19::chr2:155555201..155555272,+p1@KCNJ3
Hg19::chr2:173600040..173600056,+p20@RAPGEF4
Hg19::chr2:17773946..17773949,+p@chr2:17773946..17773949
+
Hg19::chr2:183387533..183387548,-p7@PDE1A
Hg19::chr2:197457394..197457421,-p12@HECW2
Hg19::chr2:210636313..210636335,+p3@UNC80
Hg19::chr2:2328418..2328441,-p13@MYT1L
Hg19::chr2:39893140..39893164,+p8@TMEM178
Hg19::chr2:39893171..39893182,+p13@TMEM178
Hg19::chr2:47798782..47798832,-p@chr2:47798782..47798832
-
Hg19::chr2:50201327..50201339,-p18@NRXN1
Hg19::chr3:113251885..113251917,+p4@SIDT1
Hg19::chr3:120627034..120627102,+p1@STXBP5L
Hg19::chr3:120627517..120627530,+p2@STXBP5L
Hg19::chr3:120989095..120989099,+p@chr3:120989095..120989099
+
Hg19::chr3:132843652..132843709,+p3@TMEM108
Hg19::chr3:138153411..138153433,+p2@ESYT3
Hg19::chr3:173113898..173113949,+p4@NLGN1
Hg19::chr3:182833946..182833990,-p5@MCCC1
Hg19::chr3:184098065..184098119,+p1@CHRD
Hg19::chr3:186080012..186080030,-p1@DGKG
Hg19::chr3:186080056..186080061,-p5@DGKG
Hg19::chr3:35722538..35722559,+p27@ARPP21
Hg19::chr3:37903001..37903039,+p6@CTDSPL
Hg19::chr3:52489503..52489540,+p2@NISCH
Hg19::chr3:96532248..96532290,+p@chr3:96532248..96532290
+
Hg19::chr4:103998320..103998345,-p10@SLC9B2
Hg19::chr4:114038052..114038059,+p34@ANK2
Hg19::chr4:118955635..118955655,+p3@NDST3
Hg19::chr5:110559790..110559803,+p11@CAMK4
Hg19::chr5:110559929..110559940,+p8@CAMK4
Hg19::chr5:110559941..110559952,+p4@CAMK4
Hg19::chr5:138211051..138211072,-p3@LRRTM2
Hg19::chr5:156772748..156772774,-p3@FNDC9
Hg19::chr5:160975364..160975379,-p5@GABRB2
Hg19::chr5:19873309..19873311,-p@chr5:19873309..19873311
-
Hg19::chr5:19988288..19988330,-p1@CDH18
Hg19::chr5:41510865..41510886,-p4@PLCXD3
Hg19::chr5:87981322..87981337,-p@chr5:87981322..87981337
-
Hg19::chr5:94620239..94620258,-p6@MCTP1
Hg19::chr6:101846679..101846702,+p1@GRIK2
Hg19::chr6:101846725..101846734,+p17@GRIK2
Hg19::chr6:69345285..69345308,+p2@BAI3
Hg19::chr6:69345833..69345845,+p8@BAI3
Hg19::chr6:72596229..72596272,+p2@RIMS1
Hg19::chr6:72596410..72596454,+p4@RIMS1
Hg19::chr6:72596604..72596697,+p1@RIMS1
Hg19::chr7:151511911..151511962,-p9@PRKAG2
Hg19::chr7:28997721..28997738,-p3@TRIL
Hg19::chr7:71801984..71802013,-p3@CALN1
Hg19::chr8:10158687..10158707,+p4@MSRA
Hg19::chr8:132928997..132929025,+p@chr8:132928997..132929025
+
Hg19::chr8:15095883..15095918,-p1@SGCZ
Hg19::chr8:15095933..15095945,-p3@SGCZ
Hg19::chr8:85095907..85095910,+p5@RALYL
Hg19::chr8:9761882..9761897,-p3@ENST00000521863
Hg19::chr8:9776628..9776670,-p@chr8:9776628..9776670
-
Hg19::chr8:9911618..9911629,+p8@MSRA
Hg19::chr8:9953920..9953944,+p@chr8:9953920..9953944
+
Hg19::chr9:100264031..100264042,+p4@TMOD1
Hg19::chr9:15250159..15250231,-p2@TTC39B
Hg19::chr9:79307096..79307129,-p2@PRUNE2
Hg19::chrX:123510693..123510711,-p1@ODZ1
Hg19::chrX:21392356..21392365,+p7@CNKSR2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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