Personal tools

UBERON:0004637

From FANTOM5_SSTAR

Revision as of 11:14, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0004637 |name=otic capsule |namespace= |def="The cartilage capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in t...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:otic capsule
Definition:"The cartilage capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500
Xrefs:
links:

AAO:0010143
EHDAA:4704
EHDAA2:0001333
EMAPA:17596
SCTID:361515007

VHOG:0000854
Synonyms: "otic capsule" EXACT [ZFA:0001500]
"otic capsule cartilage condensation" EXACT [EHDAA2:0001333]
"periotic capsule" RELATED [MA:0000252]
Comments:otic capsule goes to CS20 in EHDAA2, and until adult in ZFA

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000032(),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element)
part_of:UBERON:0001694(petrous part of temporal bone),UBERON:0001703(neurocranium),UBERON:0001846(internal ear)



Children

part of:UBERON:0010113 (future membranous labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_ef0848008da7a18a37873e78b0320066p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_ef0848008da7a18a37873e78b0320066p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_ef0848008da7a18a37873e78b0320066p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_ef0848008da7a18a37873e78b0320066p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_ef0848008da7a18a37873e78b0320066p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_ef0848008da7a18a37873e78b0320066p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_ef0848008da7a18a37873e78b0320066p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_ef0848008da7a18a37873e78b0320066p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_ef0848008da7a18a37873e78b0320066p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_ef0848008da7a18a37873e78b0320066p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_ef0848008da7a18a37873e78b0320066p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_ef0848008da7a18a37873e78b0320066p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_ef0848008da7a18a37873e78b0320066p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_ef0848008da7a18a37873e78b0320066p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_ef0848008da7a18a37873e78b0320066p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_ef0848008da7a18a37873e78b0320066p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ef0848008da7a18a37873e78b0320066p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_ef0848008da7a18a37873e78b0320066p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_ef0848008da7a18a37873e78b0320066p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_ef0848008da7a18a37873e78b0320066p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_ef0848008da7a18a37873e78b0320066p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_ef0848008da7a18a37873e78b0320066p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_ef0848008da7a18a37873e78b0320066p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_ef0848008da7a18a37873e78b0320066p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_ef0848008da7a18a37873e78b0320066p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_ef0848008da7a18a37873e78b0320066p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_ef0848008da7a18a37873e78b0320066p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_ef0848008da7a18a37873e78b0320066p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_ef0848008da7a18a37873e78b0320066p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_ef0848008da7a18a37873e78b0320066p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_ef0848008da7a18a37873e78b0320066p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_ef0848008da7a18a37873e78b0320066p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_ef0848008da7a18a37873e78b0320066p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_ef0848008da7a18a37873e78b0320066p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_ef0848008da7a18a37873e78b0320066p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_ef0848008da7a18a37873e78b0320066p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_ef0848008da7a18a37873e78b0320066p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_ef0848008da7a18a37873e78b0320066p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_ef0848008da7a18a37873e78b0320066p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_ef0848008da7a18a37873e78b0320066p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_ef0848008da7a18a37873e78b0320066p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_ef0848008da7a18a37873e78b0320066p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_ef0848008da7a18a37873e78b0320066p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_ef0848008da7a18a37873e78b0320066p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_ef0848008da7a18a37873e78b0320066p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_ef0848008da7a18a37873e78b0320066p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_ef0848008da7a18a37873e78b0320066p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_ef0848008da7a18a37873e78b0320066p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_ef0848008da7a18a37873e78b0320066p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_ef0848008da7a18a37873e78b0320066p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_ef0848008da7a18a37873e78b0320066p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_ef0848008da7a18a37873e78b0320066p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_ef0848008da7a18a37873e78b0320066p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_ef0848008da7a18a37873e78b0320066p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_ef0848008da7a18a37873e78b0320066p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_ef0848008da7a18a37873e78b0320066p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_ef0848008da7a18a37873e78b0320066p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_ef0848008da7a18a37873e78b0320066p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_ef0848008da7a18a37873e78b0320066p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_ef0848008da7a18a37873e78b0320066p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_ef0848008da7a18a37873e78b0320066p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_ef0848008da7a18a37873e78b0320066p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_ef0848008da7a18a37873e78b0320066p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_ef0848008da7a18a37873e78b0320066p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_ef0848008da7a18a37873e78b0320066p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_ef0848008da7a18a37873e78b0320066p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_ef0848008da7a18a37873e78b0320066p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_ef0848008da7a18a37873e78b0320066p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_ef0848008da7a18a37873e78b0320066p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_ef0848008da7a18a37873e78b0320066p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_ef0848008da7a18a37873e78b0320066p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_ef0848008da7a18a37873e78b0320066p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_ef0848008da7a18a37873e78b0320066p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_ef0848008da7a18a37873e78b0320066p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_ef0848008da7a18a37873e78b0320066p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_ef0848008da7a18a37873e78b0320066p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_ef0848008da7a18a37873e78b0320066p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_ef0848008da7a18a37873e78b0320066p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_ef0848008da7a18a37873e78b0320066p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_ef0848008da7a18a37873e78b0320066p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_ef0848008da7a18a37873e78b0320066p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_ef0848008da7a18a37873e78b0320066p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_ef0848008da7a18a37873e78b0320066p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_ef0848008da7a18a37873e78b0320066p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_ef0848008da7a18a37873e78b0320066p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_ef0848008da7a18a37873e78b0320066p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_ef0848008da7a18a37873e78b0320066p@chr12:109905399..109905416, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004637&oldid=415144"