Personal tools

CL:0000137

From FANTOM5_SSTAR

Revision as of 13:35, 8 February 2012 by Autoedit (talk | contribs) (Created page with "{{CL |id=CL:0000137 |name=osteocyte |namespace=cell |def="A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in th...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Name:osteocyte
Namespace:cell
Definition:"A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi." [GOC:tfm, MESH:A.11.329.629.500]
Xrefs:
links:

BTO:0002038

FMA:66779
Synonyms: "bone cell" BROAD []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000054(bone matrix secreting cell),CL:0002320(connective tissue cell)
develops_from:CL:0000062(osteoblast)



Children


is a:FF:0100372 (bone cancer cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000137 (osteocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr11:101742272..101742276,-#_0ed660732a846b4b3ab782edc2a82fb7p@chr11:101742272..101742276, -
1.55e-98FFCP PHASE2:Hg19::chr16:77317713..77317723,+#_0ed660732a846b4b3ab782edc2a82fb7p1@CU687665
1.55e-98FFCP PHASE1:Hg19::chr16:77317713..77317723,+#_0ed660732a846b4b3ab782edc2a82fb7p1@CU687665
1.55e-98FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_0ed660732a846b4b3ab782edc2a82fb7p@chr11:101742272..101742276, -
2.74e-50FFCP PHASE1:Hg19::chr5:14034644..14034647,-#_736baf4df13d3a10d5739d5c90a3f042p@chr5:14034644..14034647, -
2.74e-50FFCP PHASE2:Hg19::chr18:71197490..71197495,-#_736baf4df13d3a10d5739d5c90a3f042p@chr18:71197490..71197495, -
2.74e-50FFCP PHASE2:Hg19::chr16:51670868..51670880,-#_736baf4df13d3a10d5739d5c90a3f042p@chr16:51670868..51670880, -
2.74e-50FFCP PHASE2:Hg19::chr11:81551043..81551054,-#_736baf4df13d3a10d5739d5c90a3f042p@chr11:81551043..81551054, -
2.74e-50FFCP PHASE1:Hg19::chr18:71197490..71197495,-#_736baf4df13d3a10d5739d5c90a3f042p@chr18:71197490..71197495, -
2.74e-50FFCP PHASE1:Hg19::chr16:51670868..51670880,-#_736baf4df13d3a10d5739d5c90a3f042p@chr16:51670868..51670880, -
2.74e-50FFCP PHASE1:Hg19::chr11:81551043..81551054,-#_736baf4df13d3a10d5739d5c90a3f042p@chr11:81551043..81551054, -
2.74e-50FFCP PHASE2:Hg19::chr5:14034644..14034647,-#_736baf4df13d3a10d5739d5c90a3f042p@chr5:14034644..14034647, -
4.52e-50FFCP PHASE2:Hg19::chr3:106393655..106393659,+#_2d6e243a84e838a280017bbb02a76ddcp@chr3:106393655..106393659, +
4.52e-50FFCP PHASE1:Hg19::chr3:106393655..106393659,+#_2d6e243a84e838a280017bbb02a76ddcp@chr3:106393655..106393659, +
4.52e-50FFCP PHASE2:Hg19::chr3:45174403..45174415,+#_2d6e243a84e838a280017bbb02a76ddcp@chr3:45174403..45174415, +
4.52e-50FFCP PHASE1:Hg19::chr3:45174403..45174415,+#_2d6e243a84e838a280017bbb02a76ddcp@chr3:45174403..45174415, +
4.52e-50FFCP PHASE2:Hg19::chr5:23952305..23952310,+#_2d6e243a84e838a280017bbb02a76ddcp@chr5:23952305..23952310, +
4.52e-50FFCP PHASE1:Hg19::chr5:23952305..23952310,+#_2d6e243a84e838a280017bbb02a76ddcp@chr5:23952305..23952310, +
4.52e-50FFCP PHASE2:Hg19::chr4:34480309..34480321,-#_2d6e243a84e838a280017bbb02a76ddcp@chr4:34480309..34480321, -
4.52e-50FFCP PHASE1:Hg19::chr4:34480309..34480321,-#_2d6e243a84e838a280017bbb02a76ddcp@chr4:34480309..34480321, -
3.61e-34FFCP PHASE2:Hg19::chr4:177796841..177796851,+#_9e332946fce6e9f2459ae6478946d97bp1@ENST00000508790
3.61e-34FFCP PHASE1:Hg19::chr4:177796841..177796851,+#_9e332946fce6e9f2459ae6478946d97bp1@ENST00000508790
3.61e-34FFCP PHASE1:Hg19::chr7:119353807..119353812,-#_9e332946fce6e9f2459ae6478946d97bp@chr7:119353807..119353812, -
3.61e-34FFCP PHASE2:Hg19::chr7:119353807..119353812,-#_9e332946fce6e9f2459ae6478946d97bp@chr7:119353807..119353812, -
5.04e-34FFCP PHASE2:Hg19::chr4:46093758..46093781,-#_f1de44897cde57317f4f7d930dba8eb3p@chr4:46093758..46093781, -
5.04e-34FFCP PHASE1:Hg19::chr4:46093758..46093781,-#_f1de44897cde57317f4f7d930dba8eb3p@chr4:46093758..46093781, -
5.04e-34FFCP PHASE2:Hg19::chr10:37004821..37004852,-#_f1de44897cde57317f4f7d930dba8eb3p@chr10:37004821..37004852, -
5.04e-34FFCP PHASE1:Hg19::chr8:15939682..15939688,+#_f1de44897cde57317f4f7d930dba8eb3p@chr8:15939682..15939688, +
5.04e-34FFCP PHASE2:Hg19::chr8:15939682..15939688,+#_f1de44897cde57317f4f7d930dba8eb3p@chr8:15939682..15939688, +
5.04e-34FFCP PHASE1:Hg19::chr10:37004821..37004852,-#_f1de44897cde57317f4f7d930dba8eb3p@chr10:37004821..37004852, -
5.04e-34FFCP PHASE2:Hg19::chrX:132231123..132231140,-#_f1de44897cde57317f4f7d930dba8eb3p1@USP26
5.04e-34FFCP PHASE1:Hg19::chrX:132231123..132231140,-#_f1de44897cde57317f4f7d930dba8eb3p1@USP26
7.05e-34FFCP PHASE2:Hg19::chrX:89462083..89462089,+#_e54bd26e04e86a3707b09c67f84a8313p@chrX:89462083..89462089, +
7.05e-34FFCP PHASE1:Hg19::chrX:89462083..89462089,+#_e54bd26e04e86a3707b09c67f84a8313p@chrX:89462083..89462089, +
7.05e-34FFCP PHASE2:Hg19::chr11:84019133..84019135,-#_e54bd26e04e86a3707b09c67f84a8313p@chr11:84019133..84019135, -
7.05e-34FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_e54bd26e04e86a3707b09c67f84a8313p@chr6:155427848..155427862, +
7.05e-34FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_e54bd26e04e86a3707b09c67f84a8313p@chr6:155427848..155427862, +
7.05e-34FFCP PHASE1:Hg19::chr11:84019133..84019135,-#_e54bd26e04e86a3707b09c67f84a8313p@chr11:84019133..84019135, -
5.5e-31FFCP PHASE2:Hg19::chr3:106556598..106556609,-#_be09b49bb730dc66a596e1a0bd3df1a3p@chr3:106556598..106556609, -
5.5e-31FFCP PHASE1:Hg19::chr3:106556598..106556609,-#_be09b49bb730dc66a596e1a0bd3df1a3p@chr3:106556598..106556609, -
7.1e-28FFCP PHASE1:Hg19::chr6:68597008..68597030,-#_126b58f83f10db030b60aa72fc9864f6p@chr6:68597008..68597030, -
7.1e-28FFCP PHASE2:Hg19::chr6:68597008..68597030,-#_126b58f83f10db030b60aa72fc9864f6p@chr6:68597008..68597030, -
4.32e-26FFCP PHASE2:Hg19::chr11:81549961..81549965,-#_9042dc72f57b6fc04bca35e043c0af2bp@chr11:81549961..81549965, -
4.32e-26FFCP PHASE1:Hg19::chr11:81549961..81549965,-#_9042dc72f57b6fc04bca35e043c0af2bp@chr11:81549961..81549965, -
4.32e-26FFCP PHASE2:Hg19::chr5:27723923..27723927,-#_9042dc72f57b6fc04bca35e043c0af2bp@chr5:27723923..27723927, -
4.32e-26FFCP PHASE1:Hg19::chr5:27723923..27723927,-#_9042dc72f57b6fc04bca35e043c0af2bp@chr5:27723923..27723927, -
5.56e-26FFCP PHASE2:Hg19::chr5:167315847..167315852,+#_d7b62e3695120cb9edc9a17ce28a3535p@chr5:167315847..167315852, +
5.56e-26FFCP PHASE1:Hg19::chr5:167315847..167315852,+#_d7b62e3695120cb9edc9a17ce28a3535p@chr5:167315847..167315852, +
5.56e-26FFCP PHASE2:Hg19::chrX:89176902..89176913,+#_d7b62e3695120cb9edc9a17ce28a3535p1@TGIF2LX
5.56e-26FFCP PHASE1:Hg19::chrX:89176902..89176913,+#_d7b62e3695120cb9edc9a17ce28a3535p1@TGIF2LX
5.56e-26FFCP PHASE2:Hg19::chrX:124347061..124347063,-#_d7b62e3695120cb9edc9a17ce28a3535p@chrX:124347061..124347063, -
5.56e-26FFCP PHASE1:Hg19::chrX:124347061..124347063,-#_d7b62e3695120cb9edc9a17ce28a3535p@chrX:124347061..124347063, -
5.56e-26FFCP PHASE2:Hg19::chrX:132352373..132352384,-#_d7b62e3695120cb9edc9a17ce28a3535p1@TFDP3
5.56e-26FFCP PHASE1:Hg19::chrX:132352373..132352384,-#_d7b62e3695120cb9edc9a17ce28a3535p1@TFDP3
5.56e-26FFCP PHASE2:Hg19::chr5:153673183..153673186,+#_d7b62e3695120cb9edc9a17ce28a3535p@chr5:153673183..153673186, +
5.56e-26FFCP PHASE1:Hg19::chr5:153673183..153673186,+#_d7b62e3695120cb9edc9a17ce28a3535p@chr5:153673183..153673186, +
5.56e-26FFCP PHASE2:Hg19::chr4:189864018..189864037,+#_d7b62e3695120cb9edc9a17ce28a3535p@chr4:189864018..189864037, +
5.56e-26FFCP PHASE1:Hg19::chr4:189864018..189864037,+#_d7b62e3695120cb9edc9a17ce28a3535p@chr4:189864018..189864037, +
9.18e-26FFCP PHASE2:Hg19::chr18:14946224..14946236,+#_f1dbe81279fda7c7b7ce0c6efad3d9c5p1@FLJ44255
9.18e-26FFCP PHASE1:Hg19::chr18:14946224..14946236,+#_f1dbe81279fda7c7b7ce0c6efad3d9c5p1@FLJ44255
9.18e-26FFCP PHASE1:Hg19::chr7:12997533..12997536,+#_f1dbe81279fda7c7b7ce0c6efad3d9c5p@chr7:12997533..12997536, +
9.18e-26FFCP PHASE2:Hg19::chr7:12997533..12997536,+#_f1dbe81279fda7c7b7ce0c6efad3d9c5p@chr7:12997533..12997536, +
1.12e-25FFCP PHASE2:Hg19::chrX:55246809..55246816,+#_2a736f20e1c7079389b9ac301272c573p3@PAGE5
1.12e-25FFCP PHASE1:Hg19::chrX:55246809..55246816,+#_2a736f20e1c7079389b9ac301272c573p3@PAGE5
4.89e-23FFCP PHASE2:Hg19::chrX:55246818..55246829,+#_28e59faa65df0297ad70d16bc2b79402p2@PAGE5
4.89e-23FFCP PHASE1:Hg19::chrX:55246818..55246829,+#_28e59faa65df0297ad70d16bc2b79402p2@PAGE5
3.11e-21FFCP PHASE2:Hg19::chr5:27742047..27742052,-#_fe3d03d928a2f19fad1466128659d853p@chr5:27742047..27742052, -
3.11e-21FFCP PHASE1:Hg19::chr5:27742047..27742052,-#_fe3d03d928a2f19fad1466128659d853p@chr5:27742047..27742052, -
3.11e-21FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_fe3d03d928a2f19fad1466128659d853p@chr12:127737083..127737103, -
3.11e-21FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_fe3d03d928a2f19fad1466128659d853p@chr12:127737083..127737103, -
3.11e-21FFCP PHASE1:Hg19::chr8:119905427..119905438,-#_fe3d03d928a2f19fad1466128659d853p@chr8:119905427..119905438, -
3.11e-21FFCP PHASE2:Hg19::chr8:119905427..119905438,-#_fe3d03d928a2f19fad1466128659d853p@chr8:119905427..119905438, -
3.81e-21FFCP PHASE2:Hg19::chr19:9811101..9811112,-#_63f4bdca9f228776cf667a487aab343ep3@ZNF812
3.81e-21FFCP PHASE1:Hg19::chr13:87732242..87732246,-#_63f4bdca9f228776cf667a487aab343ep@chr13:87732242..87732246, -
3.81e-21FFCP PHASE1:Hg19::chr19:9811101..9811112,-#_63f4bdca9f228776cf667a487aab343ep3@ZNF812
3.81e-21FFCP PHASE2:Hg19::chr9:118595109..118595124,+#_63f4bdca9f228776cf667a487aab343ep@chr9:118595109..118595124, +
3.81e-21FFCP PHASE1:Hg19::chr9:118595109..118595124,+#_63f4bdca9f228776cf667a487aab343ep@chr9:118595109..118595124, +
3.81e-21FFCP PHASE2:Hg19::chr5:135378750..135378757,+#_63f4bdca9f228776cf667a487aab343ep@chr5:135378750..135378757, +
3.81e-21FFCP PHASE1:Hg19::chr5:135378750..135378757,+#_63f4bdca9f228776cf667a487aab343ep@chr5:135378750..135378757, +
3.81e-21FFCP PHASE2:Hg19::chr2:145815206..145815208,+#_63f4bdca9f228776cf667a487aab343ep@chr2:145815206..145815208, +
3.81e-21FFCP PHASE1:Hg19::chr2:145815206..145815208,+#_63f4bdca9f228776cf667a487aab343ep@chr2:145815206..145815208, +
3.81e-21FFCP PHASE2:Hg19::chr13:87732242..87732246,-#_63f4bdca9f228776cf667a487aab343ep@chr13:87732242..87732246, -
4.66e-21FFCP PHASE2:Hg19::chrX:140336680..140336697,-#_1b966c48d4dcfcf9ef3e20b42fff4420p2@SPANXC
4.66e-21FFCP PHASE1:Hg19::chrX:140336680..140336697,-#_1b966c48d4dcfcf9ef3e20b42fff4420p2@SPANXC
5.7e-21FFCP PHASE2:Hg19::chr2:33171944..33171945,+#_b86acf293063d27ed30218dbd06a0c61p15@LTBP1
5.7e-21FFCP PHASE1:Hg19::chr2:33171944..33171945,+#_b86acf293063d27ed30218dbd06a0c61p15@LTBP1
5.7e-21FFCP PHASE2:Hg19::chr5:142000787..142000807,-#_b86acf293063d27ed30218dbd06a0c61p@chr5:142000787..142000807, -
5.7e-21FFCP PHASE1:Hg19::chr5:142000787..142000807,-#_b86acf293063d27ed30218dbd06a0c61p@chr5:142000787..142000807, -
6.96e-21FFCP PHASE1:Hg19::chr18:63273310..63273317,+#_494e498f702dc65e3fad74fb40c6a34bp@chr18:63273310..63273317, +
6.96e-21FFCP PHASE1:Hg19::chr11:12061317..12061323,-#_494e498f702dc65e3fad74fb40c6a34bp@chr11:12061317..12061323, -
6.96e-21FFCP PHASE1:Hg19::chr11:28792916..28792929,+#_494e498f702dc65e3fad74fb40c6a34bp@chr11:28792916..28792929, +
6.96e-21FFCP PHASE2:Hg19::chr3:60761167..60761179,+#_494e498f702dc65e3fad74fb40c6a34bp@chr3:60761167..60761179, +
6.96e-21FFCP PHASE1:Hg19::chr3:60761167..60761179,+#_494e498f702dc65e3fad74fb40c6a34bp@chr3:60761167..60761179, +
6.96e-21FFCP PHASE1:Hg19::chr8:76774227..76774234,+#_494e498f702dc65e3fad74fb40c6a34bp@chr8:76774227..76774234, +
6.96e-21FFCP PHASE2:Hg19::chr8:76774227..76774234,+#_494e498f702dc65e3fad74fb40c6a34bp@chr8:76774227..76774234, +
6.96e-21FFCP PHASE2:Hg19::chr11:12061317..12061323,-#_494e498f702dc65e3fad74fb40c6a34bp@chr11:12061317..12061323, -
6.96e-21FFCP PHASE2:Hg19::chr5:81611412..81611423,+#_494e498f702dc65e3fad74fb40c6a34bp@chr5:81611412..81611423, +
6.96e-21FFCP PHASE2:Hg19::chr18:63273310..63273317,+#_494e498f702dc65e3fad74fb40c6a34bp@chr18:63273310..63273317, +
6.96e-21FFCP PHASE1:Hg19::chr5:81611412..81611423,+#_494e498f702dc65e3fad74fb40c6a34bp@chr5:81611412..81611423, +
6.96e-21FFCP PHASE2:Hg19::chr11:28792916..28792929,+#_494e498f702dc65e3fad74fb40c6a34bp@chr11:28792916..28792929, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000137&oldid=8652"