MCL coexpression mm9:399

Phase1 CAGE Peaks

	Short description
Mm9::chr11:50700965..50701027,-	p1@Zfp454
Mm9::chr11:50872733..50872809,+	p1@Zfp354a
Mm9::chr12:109661279..109661346,+	p1@Eml1
Mm9::chr15:103045716..103045792,-	p2@Cbx5
Mm9::chr15:12754596..12754638,+	p1@Drosha
Mm9::chr16:38550224..38550250,-	p2@Poglut1
Mm9::chr17:32967140..32967197,-	p1@Zfp799
Mm9::chr1:145624103..145624169,-	p1@Trove2
Mm9::chr1:165709942..165709996,+	p4@Kifap3
Mm9::chr2:73730355..73730425,-	p@chr2:73730355..73730425 -
Mm9::chr4:61869460..61869521,-	p1@Zfp37
Mm9::chr7:11080671..11080750,-	p1@Zik1
Mm9::chr7:24960051..24960080,+	p1@Zfp114
Mm9::chr7:28516417..28516460,+	p1@Zfp60
Mm9::chr7:69354369..69354380,-	p2@uc009hfe.1 p2@uc012fml.1
Mm9::chr7:69354385..69354432,-	p1@uc009hfe.1 p1@uc012fml.1
Mm9::chrX:92853718..92853729,-	p3@Zc4h2
Mm9::chrX:92853731..92853751,-	p2@Zc4h2
Mm9::chrX:92853755..92853786,-	p1@Zc4h2

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0008270	zinc ion binding	0.0109632657125492
GO:0044424	intracellular part	0.0109632657125492
GO:0046914	transition metal ion binding	0.0109632657125492
GO:0046587	positive regulation of calcium-dependent cell-cell adhesion	0.0109632657125492
GO:0016939	kinesin II complex	0.0109632657125492
GO:0046586	regulation of calcium-dependent cell-cell adhesion	0.0109632657125492
GO:0005622	intracellular	0.0109632657125492
GO:0043229	intracellular organelle	0.0170505484654286
GO:0043226	organelle	0.0170505484654286
GO:0005634	nucleus	0.0174100124011624
GO:0043169	cation binding	0.0339239644478828
GO:0010369	chromocenter	0.0344723512049932
GO:0019894	kinesin binding	0.04006297551357
GO:0046872	metal ion binding	0.04006297551357
GO:0022407	regulation of cell-cell adhesion	0.04006297551357
GO:0043167	ion binding	0.04006297551357
GO:0016339	calcium-dependent cell-cell adhesion	0.040515738197994
GO:0045785	positive regulation of cell adhesion	0.0458952073181271

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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