Personal tools

MCL coexpression mm9:133

From FANTOM5_SSTAR

Revision as of 11:02, 11 October 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:14437997..14438034,-p1@Gje1
Mm9::chr10:19925162..19925172,+p@chr10:19925162..19925172
+
Mm9::chr10:62562530..62562540,+p1@Atoh7
Mm9::chr11:120494497..120494508,+p@chr11:120494497..120494508
+
Mm9::chr12:74046619..74046630,+p@chr12:74046619..74046630
+
Mm9::chr12:74046665..74046675,+p@chr12:74046665..74046675
+
Mm9::chr12:74046677..74046684,+p@chr12:74046677..74046684
+
Mm9::chr12:74046687..74046697,+p@chr12:74046687..74046697
+
Mm9::chr12:74046750..74046761,+p@chr12:74046750..74046761
+
Mm9::chr12:74046774..74046787,+p@chr12:74046774..74046787
+
Mm9::chr12:85910771..85910785,+p1@Vsx2
Mm9::chr12:86865603..86865614,+p@chr12:86865603..86865614
+
Mm9::chr13:31991492..31991501,+p@chr13:31991492..31991501
+
Mm9::chr13:81709652..81709670,-p2@Gpr98
Mm9::chr14:18814020..18814023,+p3@Thrb
Mm9::chr14:61103994..61104005,+p@chr14:61103994..61104005
+
Mm9::chr14:61104008..61104026,+p@chr14:61104008..61104026
+
Mm9::chr14:61108681..61108683,+p@chr14:61108681..61108683
+
Mm9::chr15:30564498..30564511,+p@chr15:30564498..30564511
+
Mm9::chr17:18368516..18368523,-p@chr17:18368516..18368523
-
Mm9::chr17:24751444..24751455,-p@chr17:24751444..24751455
-
Mm9::chr17:24751458..24751473,-p@chr17:24751458..24751473
-
Mm9::chr17:35164482..35164492,+p@chr17:35164482..35164492
+
Mm9::chr17:78707813..78707820,+p@chr17:78707813..78707820
+
Mm9::chr17:86014340..86014350,-p3@ENSMUST00000162311
Mm9::chr17:86014476..86014492,-p1@ENSMUST00000162311
Mm9::chr17:86014504..86014516,-p2@ENSMUST00000162311
Mm9::chr18:66095599..66095632,-p@chr18:66095599..66095632
-
Mm9::chr18:66098673..66098684,-p2@Rax
Mm9::chr18:66098702..66098742,-p1@Rax
Mm9::chr18:66098752..66098757,-p3@Rax
Mm9::chr18:66182144..66182159,-p2@Lman1
Mm9::chr18:66182236..66182254,-p3@Lman1
Mm9::chr18:84888878..84888899,+p@chr18:84888878..84888899
+
Mm9::chr18:84890097..84890110,-p2@ENSMUST00000162318
Mm9::chr18:84890165..84890175,-p1@ENSMUST00000162318
Mm9::chr19:46222859..46222876,-p1@Pitx3
Mm9::chr1:152472420..152472431,+p1@uc007cyk.1
Mm9::chr1:51936265..51936290,-p@chr1:51936265..51936290
-
Mm9::chr1:92672349..92672354,-p@chr1:92672349..92672354
-
Mm9::chr2:105500930..105500942,+p@chr2:105500930..105500942
+
Mm9::chr2:105500957..105500969,+p@chr2:105500957..105500969
+
Mm9::chr2:120302586..120302587,+p8@Capn3
Mm9::chr2:120302647..120302660,+p2@Capn3
Mm9::chr2:173232557..173232568,+p@chr2:173232557..173232568
+
Mm9::chr2:180121458..180121468,-p2@uc008oiz.1
Mm9::chr2:180121498..180121502,-p3@uc008oiz.1
Mm9::chr2:68253915..68253921,-p@chr2:68253915..68253921
-
Mm9::chr2:90608579..90608583,+p10@Fnbp4
Mm9::chr2:90827760..90827769,+p6@Celf1
Mm9::chr3:121876676..121876690,+p@chr3:121876676..121876690
+
Mm9::chr3:17685526..17685557,-p@chr3:17685526..17685557
-
Mm9::chr3:17685568..17685584,-p@chr3:17685568..17685584
-
Mm9::chr3:26229959..26229976,-p@chr3:26229959..26229976
-
Mm9::chr3:86355053..86355062,-p@chr3:86355053..86355062
-
Mm9::chr3:96729842..96729864,-p1@Gja8
Mm9::chr3:96729979..96729990,-p2@Gja8
Mm9::chr4:114598669..114598674,-p1@Foxe3
Mm9::chr4:140954146..140954156,-p5@Clcnka
Mm9::chr5:103270071..103270076,+p@chr5:103270071..103270076
+
Mm9::chr5:112688326..112688337,+p@chr5:112688326..112688337
+
Mm9::chr5:112688342..112688357,+p@chr5:112688342..112688357
+
Mm9::chr5:112690761..112690766,+p@chr5:112690761..112690766
+
Mm9::chr5:113505559..113505563,-p@chr5:113505559..113505563
-
Mm9::chr5:113506006..113506025,-p@chr5:113506006..113506025
-
Mm9::chr5:113506223..113506243,-p@chr5:113506223..113506243
-
Mm9::chr5:114723781..114723795,-p1@Foxn4
Mm9::chr5:114723842..114723847,-p5@Foxn4
Mm9::chr5:114724042..114724090,-p2@Foxn4
Mm9::chr5:24263661..24263674,-p1@Crygn
Mm9::chr5:35731493..35731531,+p1@Hmx1
Mm9::chr5:35731576..35731581,+p4@Hmx1
Mm9::chr6:25639495..25639506,-p11@Gpr37
Mm9::chr6:54629340..54629346,+p@chr6:54629340..54629346
+
Mm9::chr7:129041851..129041873,+p@chr7:129041851..129041873
+
Mm9::chr7:150755077..150755109,-p4@Cars
Mm9::chr7:152082428..152082444,+p1@Fgf15
Mm9::chr7:152127385..152127398,-p@chr7:152127385..152127398
-
Mm9::chr7:152127432..152127449,-p@chr7:152127432..152127449
-
Mm9::chr8:113239018..113239029,+p@chr8:113239018..113239029
+
Mm9::chr8:77582172..77582183,+p@chr8:77582172..77582183
+
Mm9::chr8:77582194..77582219,+p@chr8:77582194..77582219
+
Mm9::chr8:77582242..77582256,+p@chr8:77582242..77582256
+
Mm9::chr8:77584221..77584232,+p3@Tom1
Mm9::chr8:80960539..80960548,-p1@Pou4f2
Mm9::chr9:103382696..103382703,-p7@Bfsp2
Mm9::chr9:89697580..89697585,-p1@Mir184
Mm9::chrX:104872176..104872196,+p@chrX:104872176..104872196
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0048731system development3.17060640578933e-07
GO:0007275multicellular organismal development4.02825301259622e-07
GO:0048856anatomical structure development7.97422795057435e-07
GO:0032502developmental process9.12510268051575e-06
GO:0032501multicellular organismal process1.08255785665892e-05
GO:0048513organ development1.17311696845874e-05
GO:0007399nervous system development3.11009248615317e-05
GO:0007423sensory organ development0.000159224236750079
GO:0007605sensory perception of sound0.000233166117341199
GO:0050954sensory perception of mechanical stimulus0.000259137051900052
GO:0043565sequence-specific DNA binding0.000442967931610447
GO:0003700transcription factor activity0.0014541529760685
GO:0060041retina development in camera-type eye0.00176540729959801
GO:0043010camera-type eye development0.00298502399539803
GO:0048869cellular developmental process0.00298502399539803
GO:0030154cell differentiation0.00298502399539803
GO:0022829wide pore channel activity0.00509830734741156
GO:0005243gap junction channel activity0.00509830734741156
GO:0005922connexon complex0.00509830734741156
GO:0001654eye development0.00617227078149919
GO:0048468cell development0.00617227078149919
GO:0030182neuron differentiation0.00702146208390581
GO:0005921gap junction0.00852112694554378
GO:0005212structural constituent of eye lens0.00852112694554378
GO:0048699generation of neurons0.0100366314732522
GO:0022008neurogenesis0.0125660305513375
GO:0003676nucleic acid binding0.014097615774352
GO:0016070RNA metabolic process0.014097615774352
GO:0065007biological regulation0.0143830397897842
GO:0006355regulation of transcription, DNA-dependent0.0154715056464117
GO:0006351transcription, DNA-dependent0.0156396531110116
GO:0032774RNA biosynthetic process0.0156396531110116
GO:0060040retinal bipolar neuron differentiation0.0156396531110116
GO:0014067negative regulation of phosphoinositide 3-kinase cascade0.0156396531110116
GO:0003677DNA binding0.0158314397610302
GO:0045449regulation of transcription0.0165934957700897
GO:0014704intercalated disc0.0165934957700897
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0182292920822626
GO:0005667transcription factor complex0.0182292920822626
GO:0006350transcription0.0188991732135179
GO:0009653anatomical structure morphogenesis0.0210665078456802
GO:0010468regulation of gene expression0.0221428222969416
GO:0009649entrainment of circadian clock0.0221428222969416
GO:0043547positive regulation of GTPase activity0.0221428222969416
GO:0014066regulation of phosphoinositide 3-kinase cascade0.0221428222969416
GO:0006423cysteinyl-tRNA aminoacylation0.0221428222969416
GO:0004817cysteine-tRNA ligase activity0.0221428222969416
GO:0060042retina morphogenesis in camera-type eye0.0221428222969416
GO:0031323regulation of cellular metabolic process0.0244617526616222
GO:0050794regulation of cellular process0.0244617526616222
GO:0009887organ morphogenesis0.0265603447616523
GO:0010467gene expression0.027415445658086
GO:0019222regulation of metabolic process0.0274710781192674
GO:0044451nucleoplasm part0.0274710781192674
GO:0014065phosphoinositide 3-kinase cascade0.0274710781192674
GO:0048676axon extension involved in development0.0274710781192674
GO:0042473outer ear morphogenesis0.0274710781192674
GO:0004887thyroid hormone receptor activity0.0274710781192674
GO:0043583ear development0.0292549535875154
GO:0005654nucleoplasm0.0313707201051854
GO:0051898negative regulation of protein kinase B signaling cascade0.0342443568458092
GO:0005793ER-Golgi intermediate compartment0.0342443568458092
GO:0051896regulation of protein kinase B signaling cascade0.0408052151797968
GO:0046626regulation of insulin receptor signaling pathway0.0408052151797968
GO:0043209myelin sheath0.0408052151797968
GO:0050789regulation of biological process0.0416096075125384
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0417836073135098
GO:0045165cell fate commitment0.0432855424115458
GO:0042474middle ear morphogenesis0.0460998529379166
GO:0031981nuclear lumen0.0493290610772881
GO:0007601visual perception0.0498269178099654
GO:0050953sensory perception of light stimulus0.0499982868278047



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:133&oldid=2145647"