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MCL coexpression mm9:1532

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:79605024..79605035,+p5@Atp5d
Mm9::chr10:79605040..79605056,+p4@Atp5d
Mm9::chr10:79605079..79605098,+p2@Atp5d
Mm9::chr11:54679876..54679894,+p2@Hint1
Mm9::chr19:47165168..47165173,-p2@Gm14539
p2@LOC100504912
p2@Usmg5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005743mitochondrial inner membrane0.0143950233737972
GO:0019866organelle inner membrane0.0143950233737972
GO:0031966mitochondrial membrane0.0143950233737972
GO:0005740mitochondrial envelope0.0143950233737972
GO:0044429mitochondrial part0.0143950233737972
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)0.0143950233737972
GO:0033178proton-transporting two-sector ATPase complex, catalytic domain0.0143950233737972
GO:0031975envelope0.0143950233737972
GO:0031967organelle envelope0.0143950233737972
GO:0031090organelle membrane0.0249855892454239
GO:0045259proton-transporting ATP synthase complex0.0279444512698392
GO:0015985energy coupled proton transport, down electrochemical gradient0.0290678163773041
GO:0015986ATP synthesis coupled proton transport0.0290678163773041
GO:0006754ATP biosynthetic process0.0290678163773041
GO:0006753nucleoside phosphate metabolic process0.0290678163773041
GO:0046933hydrogen ion transporting ATP synthase activity, rotational mechanism0.0290678163773041
GO:0016469proton-transporting two-sector ATPase complex0.0290678163773041
GO:0046961hydrogen ion transporting ATPase activity, rotational mechanism0.0290678163773041
GO:0046034ATP metabolic process0.0290678163773041
GO:0005739mitochondrion0.0290678163773041
GO:0009206purine ribonucleoside triphosphate biosynthetic process0.0290678163773041
GO:0009201ribonucleoside triphosphate biosynthetic process0.0290678163773041
GO:0009145purine nucleoside triphosphate biosynthetic process0.0290678163773041
GO:0019829cation-transporting ATPase activity0.0290678163773041
GO:0009142nucleoside triphosphate biosynthetic process0.0290678163773041
GO:0009205purine ribonucleoside triphosphate metabolic process0.0290678163773041
GO:0009199ribonucleoside triphosphate metabolic process0.0290678163773041
GO:0009144purine nucleoside triphosphate metabolic process0.0290678163773041
GO:0006119oxidative phosphorylation0.0290678163773041
GO:0015992proton transport0.0290678163773041
GO:0006752group transfer coenzyme metabolic process0.0290678163773041
GO:0009141nucleoside triphosphate metabolic process0.0290678163773041
GO:0009152purine ribonucleotide biosynthetic process0.0290678163773041
GO:0006818hydrogen transport0.0290678163773041
GO:0009260ribonucleotide biosynthetic process0.0296929715106224
GO:0009150purine ribonucleotide metabolic process0.0299232124906377
GO:0006164purine nucleotide biosynthetic process0.0299232124906377
GO:0009259ribonucleotide metabolic process0.0313683668974196
GO:0006163purine nucleotide metabolic process0.032303477403647
GO:0042625ATPase activity, coupled to transmembrane movement of ions0.03444783581511
GO:0009108coenzyme biosynthetic process0.03444783581511
GO:0015078hydrogen ion transmembrane transporter activity0.0368526864043736
GO:0015077monovalent inorganic cation transmembrane transporter activity0.0371002154178416
GO:0051188cofactor biosynthetic process0.0371002154178416
GO:0042626ATPase activity, coupled to transmembrane movement of substances0.041921923177726
GO:0043492ATPase activity, coupled to movement of substances0.041921923177726
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances0.041921923177726
GO:0009165nucleotide biosynthetic process0.0431575302318435
GO:0015399primary active transmembrane transporter activity0.0434545106322518
GO:0015405P-P-bond-hydrolysis-driven transmembrane transporter activity0.0434545106322518
GO:0022890inorganic cation transmembrane transporter activity0.0435937737411297
GO:0005737cytoplasm0.0493307875638466



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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