MCL coexpression mm9:1162

Phase1 CAGE Peaks

	Short description
Mm9::chr17:88840054..88840081,+	p2@Foxn2
Mm9::chr2:72817045..72817123,-	p1@Sp3
Mm9::chr3:105604217..105604233,-	p2@Rap1a
Mm9::chr3:105604241..105604295,-	p1@Rap1a
Mm9::chr4:59562147..59562175,-	p1@Rod1
Mm9::chr6:72297295..72297373,+	p1@0610030E20Rik
Mm9::chrX:39503849..39503898,+	p1@Stag2

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

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Uber Anatomy

Ontology term	p-value	n
endoderm-derived structure	9.07e-20	118
endoderm	9.07e-20	118
presumptive endoderm	9.07e-20	118
digestive system	2.09e-19	116
digestive tract	2.09e-19	116
primitive gut	2.09e-19	116
subdivision of digestive tract	5.35e-19	114
foregut	2.20e-13	80
endo-epithelium	1.26e-12	69
gut epithelium	1.36e-09	55
unilaminar epithelium	2.47e-08	66
organism subdivision	1.18e-07	150
gastrointestinal system	1.71e-07	47
mixed endoderm/mesoderm-derived structure	2.50e-07	35
hemopoietic organ	7.76e-07	29
immune organ	7.76e-07	29

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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