NonredundantMotifs:112

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant112
• db :HOCOMOCO
• Id :SMAD1_si
• name  :
• score :0.20911607655690156
  
• External refs:

EntrezGene:4086
UniProt:4086

• Internal refs:

EntrezGene:4086

Motif matrix

P0 A C G T 1 5.24242424242423 0.2727272727272715 3.969696969696956 2.4545454545454506 2 0.0 5.757575757575738 6.181818181818163 0.0 3 0.9696969696969663 8.787878787878762 0.0 2.181818181818174 4 1.93939393939393 8.909090909090878 1.090909090909087 0.0 5 0.9696969696969663 0.9696969696969663 0.0 9.999999999999972 6 0.9696969696969663 3.1515151515151394 7.272727272727243 0.5454545454545442 7 0.0 0.5454545454545442 0.0 11.393939393939348 8 0.0 9.757575757575726 2.181818181818174 0.0 9 1.090909090909087 0.0 0.0 10.848484848484807 10 0.0 0.0 10.848484848484807 1.090909090909087 11 1.090909090909087 7.696969696969668 0.9696969696969663 2.181818181818174 12 3.1515151515151394 6.606060606060587 0.0 2.181818181818174