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Coexpression cluster:C19

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Revision as of 18:01, 22 January 2013 by Autoedit (talk | contribs)
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Full id: C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma



Phase1 CAGE Peaks

Hg19::chr10:112092238..112092244,+p@chr10:112092238..112092244
+
Hg19::chr10:120518956..120518964,-p@chr10:120518956..120518964
-
Hg19::chr10:120543321..120543328,+p@chr10:120543321..120543328
+
Hg19::chr10:122794003..122794008,-p@chr10:122794003..122794008
-
Hg19::chr10:123737306..123737313,-p@chr10:123737306..123737313
-
Hg19::chr10:124639597..124639599,-p3@CUZD1
p3@FAM24B
Hg19::chr10:124768217..124768228,-p2@IKZF5
Hg19::chr10:27195771..27195778,+p@chr10:27195771..27195778
+
Hg19::chr10:31191066..31191082,-p@chr10:31191066..31191082
-
Hg19::chr10:31218537..31218558,-p@chr10:31218537..31218558
-
Hg19::chr10:47031842..47031850,+p@chr10:47031842..47031850
+
Hg19::chr10:48656799..48656821,-p@chr10:48656799..48656821
-
Hg19::chr10:4886644..4886650,-p@chr10:4886644..4886650
-
Hg19::chr10:60207445..60207451,-p@chr10:60207445..60207451
-
Hg19::chr10:64041162..64041170,+p@chr10:64041162..64041170
+
Hg19::chr10:71767282..71767287,-p@chr10:71767282..71767287
-
Hg19::chr10:71767299..71767308,-p@chr10:71767299..71767308
-
Hg19::chr10:71921185..71921194,-p@chr10:71921185..71921194
-
Hg19::chr10:71921983..71922014,-p11@SAR1A
Hg19::chr10:71922082..71922091,-p13@SAR1A
Hg19::chr10:81088686..81088700,+p@chr10:81088686..81088700
+
Hg19::chr10:82075969..82075974,+p@chr10:82075969..82075974
+
Hg19::chr10:82118815..82118820,-p@chr10:82118815..82118820
-
Hg19::chr10:82303799..82303804,+p@chr10:82303799..82303804
+
Hg19::chr10:82346468..82346472,+p@chr10:82346468..82346472
+
Hg19::chr10:90777922..90777930,-p@chr10:90777922..90777930
-
Hg19::chr10:92591332..92591337,-p@chr10:92591332..92591337
-
Hg19::chr10:95605772..95605777,+p@chr10:95605772..95605777
+
Hg19::chr11:116980715..116980720,-p@chr11:116980715..116980720
-
Hg19::chr11:11863649..11863660,+p9@USP47
Hg19::chr11:118877609..118877612,+p@chr11:118877609..118877612
+
Hg19::chr11:122933691..122933706,-p16@HSPA8
Hg19::chr11:129892329..129892334,+p1@BX648817
Hg19::chr11:29621283..29621288,-p@chr11:29621283..29621288
-
Hg19::chr11:32909403..32909408,-p@chr11:32909403..32909408
-
Hg19::chr11:33625838..33625841,-p@chr11:33625838..33625841
-
Hg19::chr11:34012712..34012718,+p@chr11:34012712..34012718
+
Hg19::chr11:42896529..42896535,+p@chr11:42896529..42896535
+
Hg19::chr11:43942607..43942622,+p1@ENST00000528226
Hg19::chr11:60618196..60618216,+p@chr11:60618196..60618216
+
Hg19::chr11:62649322..62649383,+p7@SLC3A2
Hg19::chr11:62649386..62649403,+p14@SLC3A2
Hg19::chr11:62649426..62649443,+p11@SLC3A2
Hg19::chr11:6624785..6624800,-p3@RRP8
Hg19::chr11:66757206..66757214,+p@chr11:66757206..66757214
+
Hg19::chr11:67244387..67244393,+p@chr11:67244387..67244393
+
Hg19::chr11:76319380..76319388,-p@chr11:76319380..76319388
-
Hg19::chr11:78350992..78350999,+p@chr11:78350992..78350999
+
Hg19::chr11:84019133..84019135,-p@chr11:84019133..84019135
-
Hg19::chr11:86454484..86454505,-p@chr11:86454484..86454505
-
Hg19::chr11:93474336..93474343,-p@chr11:93474336..93474343
-
Hg19::chr11:96507334..96507340,+p@chr11:96507334..96507340
+
Hg19::chr11:9780997..9781000,-p7@LOC440028
Hg19::chr11:9781031..9781042,-p5@LOC440028
Hg19::chr12:10377525..10377531,-p@chr12:10377525..10377531
-
Hg19::chr12:106627581..106627586,+p@chr12:106627581..106627586
+
Hg19::chr12:108154309..108154359,-p6@PRDM4
Hg19::chr12:113622902..113622915,+p9@C12orf52
Hg19::chr12:121465589..121465598,-p@chr12:121465589..121465598
-
Hg19::chr12:123160718..123160723,-p@chr12:123160718..123160723
-
Hg19::chr12:123898207..123898212,-p@chr12:123898207..123898212
-
Hg19::chr12:133516287..133516292,+p@chr12:133516287..133516292
+
Hg19::chr12:19678536..19678551,+p@chr12:19678536..19678551
+
Hg19::chr12:25840296..25840301,+p@chr12:25840296..25840301
+
Hg19::chr12:296753..296755,-p@chr12:296753..296755
-
Hg19::chr12:296845..296850,-p@chr12:296845..296850
-
Hg19::chr12:3278109..3278123,+p@chr12:3278109..3278123
+
Hg19::chr12:38836738..38836744,+p@chr12:38836738..38836744
+
Hg19::chr12:43004285..43004290,-p@chr12:43004285..43004290
-
Hg19::chr12:49524009..49524032,-p6@TUBA1B
Hg19::chr12:49524045..49524086,-p3@TUBA1B
Hg19::chr12:49524087..49524122,-p5@TUBA1B
Hg19::chr12:49646975..49646981,+p@chr12:49646975..49646981
+
Hg19::chr12:56583598..56583612,+p@chr12:56583598..56583612
+
Hg19::chr12:57623787..57623800,+p27@SHMT2
Hg19::chr12:57624059..57624066,+p34@SHMT2
Hg19::chr12:6242739..6242744,+p@chr12:6242739..6242744
+
Hg19::chr12:6299583..6299590,-p@chr12:6299583..6299590
-
Hg19::chr12:68112445..68112448,-p@chr12:68112445..68112448
-
Hg19::chr12:6818233..6818241,+p@chr12:6818233..6818241
+
Hg19::chr12:6826147..6826153,+p@chr12:6826147..6826153
+
Hg19::chr12:7145673..7145679,+p@chr12:7145673..7145679
+
Hg19::chr12:72579863..72579866,+p@chr12:72579863..72579866
+
Hg19::chr12:79947076..79947082,-p@chr12:79947076..79947082
-
Hg19::chr12:79956344..79956348,+p@chr12:79956344..79956348
+
Hg19::chr12:8015610..8015616,+p@chr12:8015610..8015616
+
Hg19::chr12:95851792..95851796,-p@chr12:95851792..95851796
-
Hg19::chr12:96503688..96503694,+p@chr12:96503688..96503694
+
Hg19::chr13:111474451..111474458,+p1@uc001vrj.1
Hg19::chr13:112893976..112893982,+p@chr13:112893976..112893982
+
Hg19::chr13:21313490..21313494,-p@chr13:21313490..21313494
-
Hg19::chr13:23702817..23702823,+p@chr13:23702817..23702823
+
Hg19::chr13:23716994..23716999,+p@chr13:23716994..23716999
+
Hg19::chr13:28321718..28321723,-p@chr13:28321718..28321723
-
Hg19::chr13:31752192..31752197,+p@chr13:31752192..31752197
+
Hg19::chr13:33933242..33933248,+p@chr13:33933242..33933248
+
Hg19::chr13:37575548..37575558,+p7@EXOSC8
Hg19::chr13:37575605..37575619,+p4@EXOSC8
Hg19::chr13:52981751..52981758,-p@chr13:52981751..52981758
-
Hg19::chr13:53401063..53401068,+p@chr13:53401063..53401068
+
Hg19::chr13:67196911..67196916,+p@chr13:67196911..67196916
+
Hg19::chr13:71662460..71662466,+p@chr13:71662460..71662466
+
Hg19::chr13:78049022..78049029,-p@chr13:78049022..78049029
-
Hg19::chr13:80852192..80852197,-p@chr13:80852192..80852197
-
Hg19::chr13:98728124..98728132,-p@chr13:98728124..98728132
-
Hg19::chr14:102156376..102156380,+p@chr14:102156376..102156380
+
Hg19::chr14:102583778..102583785,+p@chr14:102583778..102583785
+
Hg19::chr14:102600656..102600660,-p@chr14:102600656..102600660
-
Hg19::chr14:102601172..102601178,-p@chr14:102601172..102601178
-
Hg19::chr14:102765041..102765048,+p@chr14:102765041..102765048
+
Hg19::chr14:104267949..104267968,-p@chr14:104267949..104267968
-
Hg19::chr14:105217167..105217171,-p@chr14:105217167..105217171
-
Hg19::chr14:106015432..106015439,+p@chr14:106015432..106015439
+
Hg19::chr14:20869245..20869255,-p@chr14:20869245..20869255
-
Hg19::chr14:20869297..20869328,-p@chr14:20869297..20869328
-
Hg19::chr14:20869347..20869354,-p@chr14:20869347..20869354
-
Hg19::chr14:24657573..24657598,+p@chr14:24657573..24657598
+
Hg19::chr14:32181292..32181299,-p@chr14:32181292..32181299
-
Hg19::chr14:52589789..52589795,+p@chr14:52589789..52589795
+
Hg19::chr14:54910759..54910764,+p@chr14:54910759..54910764
+
Hg19::chr14:56306964..56306971,+p@chr14:56306964..56306971
+
Hg19::chr14:65669745..65669753,+p@chr14:65669745..65669753
+
Hg19::chr14:71721853..71721858,+p@chr14:71721853..71721858
+
Hg19::chr14:74056808..74056814,-p@chr14:74056808..74056814
-
Hg19::chr14:77002640..77002645,-p@chr14:77002640..77002645
-
Hg19::chr14:77172660..77172667,-p@chr14:77172660..77172667
-
Hg19::chr14:78479792..78479797,-p@chr14:78479792..78479797
-
Hg19::chr14:82089422..82089428,-p1@ENST00000554211
p1@uc001xvp.3
Hg19::chr14:92045291..92045298,+p@chr14:92045291..92045298
+
Hg19::chr15:101874362..101874395,-p@chr15:101874362..101874395
-
Hg19::chr15:102137828..102137836,+p@chr15:102137828..102137836
+
Hg19::chr15:33311248..33311255,-p@chr15:33311248..33311255
-
Hg19::chr15:41254685..41254691,+p@chr15:41254685..41254691
+
Hg19::chr15:62478282..62478287,-p@chr15:62478282..62478287
-
Hg19::chr15:65592968..65592974,-p2@PARP16
Hg19::chr15:69220921..69220926,-p@chr15:69220921..69220926
-
Hg19::chr15:72565054..72565059,-p@chr15:72565054..72565059
-
Hg19::chr15:72565087..72565115,-p@chr15:72565087..72565115
-
Hg19::chr15:72565125..72565150,-p@chr15:72565125..72565150
-
Hg19::chr15:74024086..74024093,-p@chr15:74024086..74024093
-
Hg19::chr15:74266915..74266918,+p@chr15:74266915..74266918
+
Hg19::chr15:74345786..74345807,+p@chr15:74345786..74345807
+
Hg19::chr15:76629007..76629012,+p4@ISL2
Hg19::chr15:79140003..79140009,+p6@MORF4L1
Hg19::chr15:80219257..80219260,+p@chr15:80219257..80219260
+
Hg19::chr15:81451911..81451917,+p11@IL16
Hg19::chr15:86553932..86553937,-p@chr15:86553932..86553937
-
Hg19::chr15:89574441..89574448,-p@chr15:89574441..89574448
-
Hg19::chr15:89683329..89683341,+p@chr15:89683329..89683341
+
Hg19::chr15:91475727..91475742,-p2@HDDC3
Hg19::chr15:93575914..93575920,+p@chr15:93575914..93575920
+
Hg19::chr15:96103231..96103240,-p@chr15:96103231..96103240
-
Hg19::chr16:16198084..16198091,-p@chr16:16198084..16198091
-
Hg19::chr16:1823455..1823488,-p4@MRPS34
Hg19::chr16:2007247..2007251,-p@chr16:2007247..2007251
-
Hg19::chr16:21000433..21000438,-p@chr16:21000433..21000438
-
Hg19::chr16:21164864..21164874,+p@chr16:21164864..21164874
+
Hg19::chr16:21301464..21301470,+p@chr16:21301464..21301470
+
Hg19::chr16:22733873..22733880,-p@chr16:22733873..22733880
-
Hg19::chr16:25069852..25069857,-p@chr16:25069852..25069857
-
Hg19::chr16:29275902..29275939,-p@chr16:29275902..29275939
-
Hg19::chr16:30006654..30006683,+p4@INO80E
Hg19::chr16:30006693..30006706,+p9@INO80E
Hg19::chr16:30007422..30007447,-p4@HIRIP3
Hg19::chr16:30772913..30772936,+p3@RNF40
Hg19::chr16:30786875..30786915,+p@chr16:30786875..30786915
+
Hg19::chr16:31276917..31276958,+p@chr16:31276917..31276958
+
Hg19::chr16:47962064..47962072,-p@chr16:47962064..47962072
-
Hg19::chr16:47984986..47984991,+p@chr16:47984986..47984991
+
Hg19::chr16:5235912..5235917,-p@chr16:5235912..5235917
-
Hg19::chr16:67008972..67008977,+p@chr16:67008972..67008977
+
Hg19::chr16:68016940..68016944,+p@chr16:68016940..68016944
+
Hg19::chr16:77835332..77835343,-p@chr16:77835332..77835343
-
Hg19::chr16:80595301..80595306,-p@chr16:80595301..80595306
-
Hg19::chr16:86587677..86587716,+p@chr16:86587677..86587716
+
Hg19::chr16:87887280..87887293,-p@chr16:87887280..87887293
-
Hg19::chr16:88871135..88871148,+p8@CDT1
Hg19::chr16:88871163..88871187,+p4@CDT1
Hg19::chr16:9277609..9277614,-p@chr16:9277609..9277614
-
Hg19::chr17:12125154..12125159,+p@chr17:12125154..12125159
+
Hg19::chr17:17536071..17536076,-p@chr17:17536071..17536076
-
Hg19::chr17:19648290..19648299,-p8@ALDH3A1
Hg19::chr17:2434827..2434832,-p@chr17:2434827..2434832
-
Hg19::chr17:30059110..30059117,+p@chr17:30059110..30059117
+
Hg19::chr17:30089454..30089461,+p@chr17:30089454..30089461
+
Hg19::chr17:33895183..33895192,+p@chr17:33895183..33895192
+
Hg19::chr17:34199282..34199293,-p@chr17:34199282..34199293
-
Hg19::chr17:34205596..34205624,-p@chr17:34205596..34205624
-
Hg19::chr17:34205650..34205655,-p@chr17:34205650..34205655
-
Hg19::chr17:37356586..37356612,+p3@RPL19
Hg19::chr17:37356620..37356631,+p5@RPL19
Hg19::chr17:38168592..38168597,+p@chr17:38168592..38168597
+
Hg19::chr17:38533091..38533096,+p@chr17:38533091..38533096
+
Hg19::chr17:38975423..38975442,+p2@TMEM99
Hg19::chr17:40264094..40264104,+p@chr17:40264094..40264104
+
Hg19::chr17:40264680..40264687,-p10@DHX58
Hg19::chr17:40714743..40714748,+p18@COASY
Hg19::chr17:41116393..41116402,-p@chr17:41116393..41116402
-
Hg19::chr17:42219331..42219355,+p3@C17orf53
Hg19::chr17:42219357..42219376,+p4@C17orf53
Hg19::chr17:4559349..4559358,-p@chr17:4559349..4559358
-
Hg19::chr17:4890649..4890664,-p5@CAMTA2
Hg19::chr17:57250693..57250698,+p@chr17:57250693..57250698
+
Hg19::chr17:58691931..58691936,+p@chr17:58691931..58691936
+
Hg19::chr17:66048776..66048781,+p@chr17:66048776..66048781
+
Hg19::chr17:66096368..66096375,+p@chr17:66096368..66096375
+
Hg19::chr17:66164928..66164934,-p@chr17:66164928..66164934
-
Hg19::chr17:685638..685645,+p2@RNMTL1
Hg19::chr17:72109034..72109039,-p@chr17:72109034..72109039
-
Hg19::chr17:73873471..73873517,+p@chr17:73873471..73873517
+
Hg19::chr17:73937072..73937087,-p2@FBF1
Hg19::chr17:74252997..74253003,-p@chr17:74252997..74253003
-
Hg19::chr17:7464541..7464572,+p@chr17:7464541..7464572
+
Hg19::chr17:7465145..7465157,-p@chr17:7465145..7465157
-
Hg19::chr17:74723013..74723026,+p5@METTL23
Hg19::chr17:74723031..74723041,+p4@METTL23
Hg19::chr17:74803170..74803177,+p@chr17:74803170..74803177
+
Hg19::chr17:7545176..7545182,+p@chr17:7545176..7545182
+
Hg19::chr17:75521708..75521716,-p@chr17:75521708..75521716
-
Hg19::chr17:76473201..76473215,-p@chr17:76473201..76473215
-
Hg19::chr17:76554336..76554347,-p@chr17:76554336..76554347
-
Hg19::chr17:76554394..76554409,-p@chr17:76554394..76554409
-
Hg19::chr17:76554414..76554426,-p@chr17:76554414..76554426
-
Hg19::chr17:76554439..76554453,-p@chr17:76554439..76554453
-
Hg19::chr17:76554464..76554469,-p@chr17:76554464..76554469
-
Hg19::chr17:76554473..76554478,-p@chr17:76554473..76554478
-
Hg19::chr17:76554482..76554493,-p@chr17:76554482..76554493
-
Hg19::chr17:76554524..76554537,-p@chr17:76554524..76554537
-
Hg19::chr17:77967503..77967526,-p@chr17:77967503..77967526
-
Hg19::chr17:77967532..77967548,-p@chr17:77967532..77967548
-
Hg19::chr17:78865226..78865237,+p@chr17:78865226..78865237
+
Hg19::chr17:79213963..79213968,+p@chr17:79213963..79213968
+
Hg19::chr17:79325381..79325386,-p@chr17:79325381..79325386
-
Hg19::chr17:9712799..9712804,-p@chr17:9712799..9712804
-
Hg19::chr18:11716492..11716497,-p@chr18:11716492..11716497
-
Hg19::chr18:12558482..12558488,-p@chr18:12558482..12558488
-
Hg19::chr18:13134262..13134267,-p@chr18:13134262..13134267
-
Hg19::chr18:21156908..21156913,-p@chr18:21156908..21156913
-
Hg19::chr18:31399486..31399492,-p@chr18:31399486..31399492
-
Hg19::chr18:47322638..47322687,-p@chr18:47322638..47322687
-
Hg19::chr18:48650585..48650590,-p@chr18:48650585..48650590
-
Hg19::chr18:56127646..56127653,+p@chr18:56127646..56127653
+
Hg19::chr18:57457275..57457281,-p@chr18:57457275..57457281
-
Hg19::chr18:57569755..57569788,+p@chr18:57569755..57569788
+
Hg19::chr18:57569859..57569869,+p@chr18:57569859..57569869
+
Hg19::chr18:7365178..7365185,-p@chr18:7365178..7365185
-
Hg19::chr18:74500064..74500071,-p@chr18:74500064..74500071
-
Hg19::chr18:9297873..9297877,+p@chr18:9297873..9297877
+
Hg19::chr19:14389350..14389356,+p@chr19:14389350..14389356
+
Hg19::chr19:19432213..19432244,-p@chr19:19432213..19432244
-
Hg19::chr19:2270923..2270962,+p2@BC035151
Hg19::chr19:2393146..2393152,+p@chr19:2393146..2393152
+
Hg19::chr19:2811132..2811142,+p@chr19:2811132..2811142
+
Hg19::chr19:2813466..2813476,-p2@CU677941
p2@CU680691
Hg19::chr19:2813510..2813521,-p1@CU677941
p1@CU680691
Hg19::chr19:29218538..29218553,-p2@ENST00000511462
p2@uc002nsa.1
Hg19::chr19:29931904..29931910,+p@chr19:29931904..29931910
+
Hg19::chr19:30195599..30195633,-p@chr19:30195599..30195633
-
Hg19::chr19:30195830..30195837,-p@chr19:30195830..30195837
-
Hg19::chr19:30199646..30199653,-p15@C19orf12
Hg19::chr19:33184345..33184352,-p@chr19:33184345..33184352
-
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Hg19::chr19:39787043..39787048,+p1@IL29
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Hg19::chr19:40725827..40725847,-p@chr19:40725827..40725847
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Hg19::chr19:45065120..45065143,-p@chr19:45065120..45065143
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Hg19::chr19:46242915..46242933,+p1@LOC388553
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Hg19::chr19:48613876..48613886,-p7@PLA2G4C
Hg19::chr19:49258606..49258620,-p8@FUT1
Hg19::chr19:49258775..49258786,+p2@FGF21
Hg19::chr19:49258859..49258870,+p3@FGF21
Hg19::chr19:55919490..55919532,-p2@UBE2S
Hg19::chr19:58898201..58898213,+p5@RPS5
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Hg19::chr19:8444480..8444485,+p@chr19:8444480..8444485
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Hg19::chr19:8444800..8444818,+p@chr19:8444800..8444818
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Hg19::chr19:8451678..8451686,+p@chr19:8451678..8451686
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Hg19::chr19:8452853..8452863,+p@chr19:8452853..8452863
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Hg19::chr19:9393555..9393564,-p@chr19:9393555..9393564
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Hg19::chr19:9659416..9659424,+p@chr19:9659416..9659424
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Hg19::chr1:11159592..11159597,+p4@ENST00000435388
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Hg19::chr1:151254469..151254483,-p3@ENST00000447795
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Hg19::chr1:160604524..160604544,-p@chr1:160604524..160604544
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Hg19::chr1:160604588..160604598,-p@chr1:160604588..160604598
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Hg19::chr1:160607259..160607277,-p3@SLAMF1
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Hg19::chr1:16694746..16694749,+p@chr1:16694746..16694749
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Hg19::chr1:169305581..169305588,-p@chr1:169305581..169305588
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Hg19::chr1:181015790..181015795,+p@chr1:181015790..181015795
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Hg19::chr1:188827858..188827863,+p@chr1:188827858..188827863
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Hg19::chr1:197038543..197038548,-p@chr1:197038543..197038548
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Hg19::chr1:203903420..203903437,+p@chr1:203903420..203903437
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Hg19::chr1:205264274..205264298,-p@chr1:205264274..205264298
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Hg19::chr1:210031473..210031482,-p@chr1:210031473..210031482
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Hg19::chr1:211402420..211402426,+p@chr1:211402420..211402426
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Hg19::chr1:212063644..212063649,+p@chr1:212063644..212063649
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Hg19::chr1:220292518..220292528,-p@chr1:220292518..220292528
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Hg19::chr1:225620131..225620138,+p@chr1:225620131..225620138
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Hg19::chr1:228290095..228290116,-p@chr1:228290095..228290116
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Hg19::chr1:231424784..231424790,-p@chr1:231424784..231424790
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Hg19::chr1:232735144..232735179,-p@chr1:232735144..232735179
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Hg19::chr1:233006777..233006784,-p@chr1:233006777..233006784
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Hg19::chr1:237472092..237472100,-p@chr1:237472092..237472100
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Hg19::chr1:240087588..240087592,-p@chr1:240087588..240087592
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Hg19::chr1:24069642..24069646,+p5@TCEB3
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Hg19::chr1:2730620..2730627,+p@chr1:2730620..2730627
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Hg19::chr1:29457191..29457198,-p@chr1:29457191..29457198
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Hg19::chr1:39734789..39734806,+p@chr1:39734789..39734806
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Hg19::chr1:39734819..39734828,+p@chr1:39734819..39734828
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Hg19::chr1:39734841..39734851,+p@chr1:39734841..39734851
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Hg19::chr1:41023512..41023518,-p@chr1:41023512..41023518
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Hg19::chr1:45196960..45196987,-p@chr1:45196960..45196987
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Hg19::chr1:45241352..45241359,+p4@RPS8
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Hg19::chr1:59090089..59090095,+p@chr1:59090089..59090095
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Hg19::chr1:64972270..64972278,+p@chr1:64972270..64972278
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Hg19::chr1:73642530..73642571,-p@chr1:73642530..73642571
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Hg19::chr1:83242012..83242017,-p@chr1:83242012..83242017
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Hg19::chr1:88101316..88101319,-p@chr1:88101316..88101319
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Hg19::chr1:90449754..90449760,-p@chr1:90449754..90449760
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Hg19::chr1:934985..934997,-p9@HES4
Hg19::chr1:936069..936101,-p@chr1:936069..936101
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Hg19::chr1:936318..936336,+p@chr1:936318..936336
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Hg19::chr1:952959..952965,-p@chr1:952959..952965
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Hg19::chr1:9747451..9747467,-p5@uc001aqd.2
Hg19::chr20:1221512..1221516,+p@chr20:1221512..1221516
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Hg19::chr20:13765507..13765517,-p5@ESF1
Hg19::chr20:18209026..18209030,+p@chr20:18209026..18209030
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Hg19::chr20:20750248..20750253,+p@chr20:20750248..20750253
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Hg19::chr20:23716596..23716602,+p@chr20:23716596..23716602
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Hg19::chr20:23792487..23792494,+p@chr20:23792487..23792494
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Hg19::chr20:30135170..30135241,+p2@HM13
Hg19::chr20:30135258..30135269,+p4@HM13
Hg19::chr20:3184655..3184688,-p@chr20:3184655..3184688
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Hg19::chr20:39538537..39538543,-p@chr20:39538537..39538543
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Hg19::chr20:39540611..39540617,+p@chr20:39540611..39540617
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Hg19::chr20:42286235..42286249,+p@chr20:42286235..42286249
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Hg19::chr20:43665028..43665052,+p@chr20:43665028..43665052
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Hg19::chr20:43988581..43988588,+p@chr20:43988581..43988588
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Hg19::chr20:44721463..44721471,+p@chr20:44721463..44721471
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Hg19::chr20:46688438..46688444,+p@chr20:46688438..46688444
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Hg19::chr20:47180157..47180163,-p@chr20:47180157..47180163
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Hg19::chr20:55924311..55924317,+p@chr20:55924311..55924317
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Hg19::chr20:62432859..62432865,+p@chr20:62432859..62432865
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Hg19::chr21:17567375..17567387,+p@chr21:17567375..17567387
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Hg19::chr21:17567393..17567404,+p@chr21:17567393..17567404
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Hg19::chr21:27151440..27151444,+p@chr21:27151440..27151444
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Hg19::chr21:29257312..29257316,-p@chr21:29257312..29257316
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Hg19::chr21:30157153..30157159,+p@chr21:30157153..30157159
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Hg19::chr21:30364948..30364962,-p@chr21:30364948..30364962
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Hg19::chr21:30373296..30373301,+p@chr21:30373296..30373301
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Hg19::chr21:33027237..33027243,+p@chr21:33027237..33027243
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Hg19::chr21:37693087..37693102,-p@chr21:37693087..37693102
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Hg19::chr21:43083488..43083503,+p@chr21:43083488..43083503
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Hg19::chr21:43832289..43832298,+p@chr21:43832289..43832298
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Hg19::chr21:44299212..44299278,+p4@NDUFV3
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Hg19::chr22:18535521..18535528,-p@chr22:18535521..18535528
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Hg19::chr22:18624067..18624072,+p@chr22:18624067..18624072
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Hg19::chr22:18639119..18639125,+p@chr22:18639119..18639125
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Hg19::chr22:19028616..19028628,-p5@DGCR2
Hg19::chr22:21356345..21356367,-p3@THAP7
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Hg19::chr22:23358662..23358667,-p@chr22:23358662..23358667
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Hg19::chr22:30993827..30993833,+p1@ENST00000432130
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Hg19::chr22:36727653..36727660,-p@chr22:36727653..36727660
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Hg19::chr22:36727693..36727704,-p@chr22:36727693..36727704
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Hg19::chr22:39712867..39712899,-p1@RNU86
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Hg19::chr22:42159318..42159324,-p@chr22:42159318..42159324
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Hg19::chr22:42342943..42342962,+p@chr22:42342943..42342962
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Hg19::chr22:42487125..42487138,+p6@ENST00000417327
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Hg19::chr22:43366203..43366214,-p@chr22:43366203..43366214
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Hg19::chr22:45271355..45271359,-p@chr22:45271355..45271359
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Hg19::chr22:47187602..47187614,+p@chr22:47187602..47187614
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Hg19::chr22:50063053..50063059,-p@chr22:50063053..50063059
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Hg19::chr2:10232601..10232606,+p@chr2:10232601..10232606
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Hg19::chr2:120755355..120755358,+p@chr2:120755355..120755358
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Hg19::chr2:134866451..134866458,-p@chr2:134866451..134866458
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Hg19::chr2:163175088..163175101,-p4@IFIH1
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Hg19::chr2:166011683..166011721,-p@chr2:166011683..166011721
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Hg19::chr2:166011767..166011771,-p@chr2:166011767..166011771
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Hg19::chr2:169580927..169580931,-p@chr2:169580927..169580931
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Hg19::chr2:171771377..171771384,-p@chr2:171771377..171771384
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Hg19::chr2:173452376..173452384,-p@chr2:173452376..173452384
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Hg19::chr2:175573701..175573705,-p@chr2:175573701..175573705
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Hg19::chr2:177873443..177873448,+p@chr2:177873443..177873448
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Hg19::chr2:178701304..178701311,+p@chr2:178701304..178701311
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Hg19::chr2:190919..190926,-p@chr2:190919..190926
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Hg19::chr2:198455678..198455684,-p@chr2:198455678..198455684
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Hg19::chr2:201040237..201040241,+p@chr2:201040237..201040241
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Hg19::chr2:206842734..206842739,+p@chr2:206842734..206842739
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Hg19::chr2:209092017..209092022,-p@chr2:209092017..209092022
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Hg19::chr2:213585184..213585187,-p@chr2:213585184..213585187
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Hg19::chr2:220065580..220065587,-p@chr2:220065580..220065587
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Hg19::chr2:220178311..220178317,+p@chr2:220178311..220178317
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Hg19::chr2:222237374..222237380,-p@chr2:222237374..222237380
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Hg19::chr2:225521350..225521355,+p@chr2:225521350..225521355
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Hg19::chr2:228186552..228186557,+p@chr2:228186552..228186557
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Hg19::chr2:234932283..234932289,-p@chr2:234932283..234932289
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Hg19::chr2:23526928..23526933,-p@chr2:23526928..23526933
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Hg19::chr2:32029538..32029543,+p@chr2:32029538..32029543
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Hg19::chr2:38625138..38625142,+p@chr2:38625138..38625142
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Hg19::chr2:40899393..40899396,+p@chr2:40899393..40899396
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Hg19::chr2:54857119..54857146,-p@chr2:54857119..54857146
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Hg19::chr2:54857199..54857209,-p@chr2:54857199..54857209
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Hg19::chr2:5938563..5938571,+p@chr2:5938563..5938571
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Hg19::chr2:71319046..71319051,-p@chr2:71319046..71319051
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Hg19::chr2:85560913..85560918,-p@chr2:85560913..85560918
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Hg19::chr2:9042999..9043004,-p@chr2:9042999..9043004
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Hg19::chr2:98756294..98756310,+p@chr2:98756294..98756310
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Hg19::chr3:120009490..120009496,+p@chr3:120009490..120009496
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Hg19::chr3:126774396..126774402,-p@chr3:126774396..126774402
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Hg19::chr3:133788694..133788698,-p@chr3:133788694..133788698
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Hg19::chr3:140591299..140591304,+p@chr3:140591299..140591304
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Hg19::chr3:14079544..14079549,+p@chr3:14079544..14079549
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Hg19::chr3:151871166..151871172,+p@chr3:151871166..151871172
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Hg19::chr3:152873087..152873093,-p1@BC034800
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Hg19::chr3:155759920..155759926,+p@chr3:155759920..155759926
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Hg19::chr3:155770710..155770714,+p@chr3:155770710..155770714
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Hg19::chr3:170046227..170046231,+p@chr3:170046227..170046231
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Hg19::chr3:31912598..31912603,+p@chr3:31912598..31912603
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Hg19::chr3:32668126..32668134,+p@chr3:32668126..32668134
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Hg19::chr3:37275339..37275344,+p@chr3:37275339..37275344
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Hg19::chr5:1083468..1083474,+p@chr5:1083468..1083474
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Hg19::chr5:43121586..43121601,+p10@ZNF131
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Hg19::chr6:30486426..30486431,+p@chr6:30486426..30486431
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Hg19::chr6:31546396..31546419,+p@chr6:31546396..31546419
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Hg19::chr6:3171825..3171831,+p@chr6:3171825..3171831
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Hg19::chr6:33501075..33501080,+p@chr6:33501075..33501080
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Hg19::chr6:35436198..35436226,+p3@RPL10A
Hg19::chr6:35436233..35436244,+p4@RPL10A
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Hg19::chr6:35899879..35899885,+p@chr6:35899879..35899885
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Hg19::chr6:36331396..36331401,-p@chr6:36331396..36331401
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Hg19::chr6:3772798..3772802,+p@chr6:3772798..3772802
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Hg19::chr6:4091296..4091303,+p@chr6:4091296..4091303
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Hg19::chr6:42192459..42192497,+p@chr6:42192459..42192497
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Hg19::chr6:43435261..43435269,+p@chr6:43435261..43435269
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Hg19::chr6:43655352..43655375,-p@chr6:43655352..43655375
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Hg19::chr7:28449026..28449037,+p8@CREB5
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Hg19::chr7:79377559..79377563,+p@chr7:79377559..79377563
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Hg19::chrX:74392787..74392789,-p@chrX:74392787..74392789
-
Hg19::chrX:88000910..88000918,-p@chrX:88000910..88000918
-
Hg19::chrX:89777122..89777128,+p@chrX:89777122..89777128
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
0.0001085363572843420.0238823869374849492Ribosome (KEGG):03010
0.0001131866679501650.0238823869374849493Cytoplasmic Ribosomal Proteins (Wikipathways):WP477
0.000378796645274030.0479556552916922211Signaling by VEGF (Reactome):REACT_12529
0.0002479967093774880.03924547925898754114Regulation of beta-cell development (Reactome):REACT_13698
4.08210231317272e-050.02388238693748495143Influenza Infection (Reactome):REACT_6167



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0044424intracellular part0.000118251118478727
GO:0044237cellular metabolic process0.000118251118478727
GO:0043229intracellular organelle0.000118251118478727
GO:0043226organelle0.000118251118478727
GO:0043231intracellular membrane-bound organelle0.000264921640815833
GO:0043227membrane-bound organelle0.000264921640815833
GO:0005634nucleus0.000264921640815833
GO:0043283biopolymer metabolic process0.000436316018510323
GO:0005622intracellular0.000454795999831926
GO:0003677DNA binding0.000638329673173698
GO:0003676nucleic acid binding0.000680990050141197
GO:0050789regulation of biological process0.000959069478515697
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.00169134958778105
GO:0050794regulation of cellular process0.00222394499945679
GO:0044238primary metabolic process0.00261868380308172
GO:0019222regulation of metabolic process0.00261868380308172
GO:0010467gene expression0.00261868380308172
GO:0043170macromolecule metabolic process0.00288656026368036
GO:0031323regulation of cellular metabolic process0.00368743257469057
GO:0050930induction of positive chemotaxis0.00385761371356052
GO:0045449regulation of transcription0.00385761371356052
GO:0006355regulation of transcription, DNA-dependent0.00385761371356052
GO:0065007biological regulation0.00450793968205722
GO:0003723RNA binding0.00461241352901987
GO:0050926regulation of positive chemotaxis0.00461241352901987
GO:0050927positive regulation of positive chemotaxis0.00461241352901987
GO:0050918positive chemotaxis0.00461241352901987
GO:0006351transcription, DNA-dependent0.00461241352901987
GO:0032774RNA biosynthetic process0.00461241352901987
GO:0050921positive regulation of chemotaxis0.00507701195539429
GO:0048010vascular endothelial growth factor receptor signaling pathway0.00507701195539429
GO:0006350transcription0.00530438430267921
GO:0050920regulation of chemotaxis0.00532145601135416
GO:0004386helicase activity0.00532145601135416
GO:0010468regulation of gene expression0.00532145601135416
GO:0016070RNA metabolic process0.00532145601135416
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.00532145601135416
GO:0005515protein binding0.00818749528637169
GO:0005830cytosolic ribosome (sensu Eukaryota)0.00902551579835063
GO:0044464cell part0.0111103756860159
GO:0048522positive regulation of cellular process0.0128505742145479
GO:0006512ubiquitin cycle0.0156105322851209
GO:0048518positive regulation of biological process0.024311547562387
GO:0032003interleukin-28 receptor binding0.0297058361788139
GO:0032023trypsinogen activation0.0297058361788139
GO:0045345positive regulation of MHC class I biosynthetic process0.0297058361788139
GO:0004595pantetheine-phosphate adenylyltransferase activity0.0297058361788139
GO:0004140dephospho-CoA kinase activity0.0297058361788139
GO:0005843cytosolic small ribosomal subunit (sensu Eukaryota)0.0317741409504344
GO:0045941positive regulation of transcription0.0369311487256354
GO:0045935positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0410791181765393
GO:0046475glycerophospholipid catabolic process0.0499800720172071
GO:0008106alcohol dehydrogenase (NADP+) activity0.0499800720172071
GO:0045343regulation of MHC class I biosynthetic process0.0499800720172071
GO:0045341MHC class I biosynthetic process0.0499800720172071
GO:0000281cytokinesis after mitosis0.0499800720172071
GO:0006931substrate-bound cell migration, cell attachment to substrate0.0499800720172071



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
antibody secreting cell4.22e-211
plasma cell4.22e-211
plasmablast4.22e-211
mature B cell3.02e-112
pre-B-II cell3.02e-112
transitional stage B cell3.02e-112
small pre-B-II cell3.02e-112
immature B cell3.02e-112
precursor B cell6.34e-083
Uber Anatomy
Ontology termp-valuen
testis5.15e-118
male reproductive organ2.92e-0811


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.127521
MA0006.18.3523e-06
MA0007.110.3159
MA0009.10.000686214
MA0014.10
MA0017.13.46048e-06
MA0019.10.00246484
MA0024.10.0173789
MA0025.10.10017
MA0027.10.60469
MA0028.11.43198e-06
MA0029.180.4385
MA0030.10.000190256
MA0031.159.1855
MA0038.145.5705
MA0040.10.00291099
MA0041.10.0300519
MA0042.12.42939e-07
MA0043.10.889988
MA0046.11.62374e-05
MA0048.10
MA0050.10.0691598
MA0051.113.0291
MA0052.10.00760578
MA0055.16.01039e-05
MA0056.10
MA0057.11.44649e-16
MA0058.10.0865594
MA0059.11.0318
MA0060.11476.51
MA0061.10.310524
MA0063.10
MA0066.12.88559e-05
MA0067.10.0811869
MA0068.12.35335e-06
MA0069.10.011781
MA0070.115.7119
MA0071.10.00326992
MA0072.144.0103
MA0073.10
MA0074.10.00233749
MA0076.17.29868e-06
MA0077.10.0572633
MA0078.10.190838
MA0081.16.94207e-07
MA0083.163.7714
MA0084.10.0106307
MA0087.10.00110151
MA0088.19.16111e-16
MA0089.10
MA0090.19.2671e-05
MA0091.17.01603e-05
MA0092.10.000367467
MA0093.10.184846
MA0095.10
MA0098.10
MA0100.15.84978e-05
MA0101.10.815305
MA0103.10.00537382
MA0105.16.51334e-08
MA0106.10.00402017
MA0107.13.07048
MA0108.23.25785
MA0109.10
MA0111.10.00074789
MA0113.10.0120547
MA0114.11.06074e-09
MA0115.10.0135419
MA0116.17.32323e-07
MA0117.10.0557349
MA0119.10.00132538
MA0122.10.721572
MA0124.10.00772192
MA0125.10.622919
MA0130.10
MA0131.10.000282118
MA0132.10
MA0133.10
MA0135.10.000323111
MA0136.10.00375107
MA0139.14.29318e-09
MA0140.1225.777
MA0141.16.26178e-06
MA0142.10.00184801
MA0143.10.000979281
MA0144.12.34683e-08
MA0145.14.04058
MA0146.10
MA0147.10.0651727
MA0148.10.0017164
MA0149.11.58969e-09
MA0062.23.21941e-10
MA0035.2135.401
MA0039.22.03873
MA0138.24.21981e-06
MA0002.23.744e-13
MA0137.22.81354e-06
MA0104.20.00803413
MA0047.20.00822449
MA0112.24.60225e-13
MA0065.20
MA0150.10.554303
MA0151.10
MA0152.10.0104269
MA0153.10.00141735
MA0154.10
MA0155.19.64327e-16
MA0156.15.13133
MA0157.184.4114
MA0158.10
MA0159.11.58877e-09
MA0160.10.00200503
MA0161.10
MA0162.10
MA0163.10
MA0164.10.00155934
MA0080.26.87016e-05
MA0018.20.414774
MA0099.22.46056
MA0079.20
MA0102.20.0683544
MA0258.14.04543e-08
MA0259.13.07338
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
JUNB#3726411.615232868793650.002191040736007090.0126327759427981
MAFF#23764292.101860152134380.0001966750162071570.00236342676535028
MAFK#7975471.639297886072080.0008007523028816570.00611552246878664
NFYA#480042410.05462833555753.10234688467927e-3182.94550914803707e-314
NFYB#48013587.722015424409336.4969602989265e-2213.57124229820834e-217



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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