Personal tools

UBERON:0002321

From FANTOM5_SSTAR

Revision as of 17:16, 15 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:extraglomerular mesangium
Xrefs:
links:

EMAPA:28278
FMA:84141

MA:0002602
Comments:editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus?
Alt_id: UBERON:FMA_84141-MA_0002602

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003567(abdomen connective tissue),UBERON:0003891(stroma),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0001229(renal corpuscle),UBERON:0002303(juxtaglomerular apparatus),UBERON:0002319(mesangium)



Children

part of:CL:0002173 (extraglomerular mesangial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002321 (extraglomerular mesangium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.34e-79FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_1ce34683a19fcb3f3db10fa17f354424p@chr2:133426030..133426041, -
2.34e-79FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_1ce34683a19fcb3f3db10fa17f354424p@chr2:133426030..133426041, -
3.49e-79FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_982463c32dbd45ba36409bccd248466bp23@TTC39A
3.49e-79FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_982463c32dbd45ba36409bccd248466bp23@TTC39A
2.03e-66FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_97e3d955123b647c088a719270763249p@chr2:133426106..133426117, -
2.03e-66FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_97e3d955123b647c088a719270763249p@chr2:133426106..133426117, -
1.46e-50FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_f257b62251e4f7119fa09709745f461ap@chr10:134535354..134535366, -
1.46e-50FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_f257b62251e4f7119fa09709745f461ap8@PAX2
1.46e-50FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_f257b62251e4f7119fa09709745f461ap@chr10:134535354..134535366, -
1.46e-50FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_f257b62251e4f7119fa09709745f461ap8@PAX2
3.11e-50FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_e6b51a7ca38f89efc66616ba0c54ac67p19@PEMT
3.11e-50FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_e6b51a7ca38f89efc66616ba0c54ac67p19@PEMT
4.52e-50FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_60c2b980d9ed5ff6fb0f7baf27053d32p@chr9:81641483..81641491, -
4.52e-50FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_60c2b980d9ed5ff6fb0f7baf27053d32p10@PAX2
4.52e-50FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_60c2b980d9ed5ff6fb0f7baf27053d32p@chr9:81641483..81641491, -
4.52e-50FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_60c2b980d9ed5ff6fb0f7baf27053d32p10@PAX2
8.98e-41FFCP PHASE1:Hg19::chr17:171082..171101,+#_7391291e56c731ccb5d1b1ff6ba19b9fp@chr17:171082..171101, +
8.98e-41FFCP PHASE2:Hg19::chr17:171082..171101,+#_7391291e56c731ccb5d1b1ff6ba19b9fp@chr17:171082..171101, +
1.1e-40FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_290376cd5013209ddf3feaebc190d721p@chr3:172384246..172384250, +
1.1e-40FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_290376cd5013209ddf3feaebc190d721p@chr3:172384246..172384250, +
1.64e-40FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_6b6ddc239aa04181225ad7eaaa082b86p@chr1:45087902..45087912, +
1.64e-40FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_6b6ddc239aa04181225ad7eaaa082b86p@chr1:45087902..45087912, +
3.68e-40FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_ffdc13fda1f119d9468dfe081653c20cp5@PAX2
3.68e-40FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_ffdc13fda1f119d9468dfe081653c20cp5@PAX2
8.2e-37FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_4c4dc6598c023003701fa158cef6e06bp6@PAX2
8.2e-37FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_4c4dc6598c023003701fa158cef6e06bp6@PAX2
9.84e-37FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_55f3e44a31e1a0c87e0f378ae68bac9fp3@CRB2
9.84e-37FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_55f3e44a31e1a0c87e0f378ae68bac9fp3@CRB2
6.0e-34FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_d1d0cc4af7ae0aa3e95e0cfb78d89954p@chr2:113984760..113984792, +
6.0e-34FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_d1d0cc4af7ae0aa3e95e0cfb78d89954p@chr2:113984760..113984792, +
7.05e-34FFCP PHASE1:Hg19::chr11:555661..555679,+#_9f33f98c5f8f201a687efd4f860e5040p@chr11:555661..555679, +
7.05e-34FFCP PHASE1:Hg19::chr1:858638..858648,+#_9f33f98c5f8f201a687efd4f860e5040p@chr1:858638..858648, +
7.05e-34FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_9f33f98c5f8f201a687efd4f860e5040p@chr7:27164585..27164612, -
7.05e-34FFCP PHASE2:Hg19::chr11:555661..555679,+#_9f33f98c5f8f201a687efd4f860e5040p@chr11:555661..555679, +
7.05e-34FFCP PHASE2:Hg19::chr1:858638..858648,+#_9f33f98c5f8f201a687efd4f860e5040p@chr1:858638..858648, +
7.05e-34FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_9f33f98c5f8f201a687efd4f860e5040p@chr7:27164585..27164612, -
8.39e-34FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_775720cdf9747676990e5fd6cb648236p13@SPOCK2
8.39e-34FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_775720cdf9747676990e5fd6cb648236p13@SPOCK2
1.17e-33FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_edbb23d80c35f9e44f80b2f781e64e78p25@PHLDB1
1.17e-33FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_edbb23d80c35f9e44f80b2f781e64e78p25@PHLDB1
3.35e-32FFCP PHASE2:Hg19::chr2:693362..693373,+#_f1e756f536c9ecdf57549eda448e363ep@chr2:693362..693373, +
3.35e-32FFCP PHASE1:Hg19::chr2:693362..693373,+#_f1e756f536c9ecdf57549eda448e363ep@chr2:693362..693373, +
2.54e-31FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_a4a08a83598ed3029423f83d53d294eep1@RIPPLY1
2.54e-31FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_a4a08a83598ed3029423f83d53d294eep1@RIPPLY1
8.05e-30FFCP PHASE2:Hg19::chr17:171147..171161,+#_5af3bcebe5048f4c5976cdee25692037p@chr17:171147..171161, +
8.05e-30FFCP PHASE1:Hg19::chr17:171147..171161,+#_5af3bcebe5048f4c5976cdee25692037p@chr17:171147..171161, +
2.96e-29FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_aa29452c165c44bce3e4f3b8279615a7p@chr2:165477405..165477418, -
2.96e-29FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_aa29452c165c44bce3e4f3b8279615a7p@chr2:165477405..165477418, -
4.55e-29FFCP PHASE2:Hg19::chr1:874109..874143,+#_a8454bf590a2813686eb4685973e476cp@chr1:874109..874143, +
4.55e-29FFCP PHASE1:Hg19::chr1:874109..874143,+#_a8454bf590a2813686eb4685973e476cp@chr1:874109..874143, +
1.43e-28FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_e16a5cfd628a47706afd5894b8ccf9a2p@chr2:113999199..113999214, +
1.43e-28FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_e16a5cfd628a47706afd5894b8ccf9a2p@chr2:113999199..113999214, +
1.83e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_741a04d26f8018c4c406011e646a9c34p@chr16:86604624..86604648, +
1.83e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_741a04d26f8018c4c406011e646a9c34p7@LRRN4
1.83e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_741a04d26f8018c4c406011e646a9c34p@chr16:86604624..86604648, +
1.83e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_741a04d26f8018c4c406011e646a9c34p7@LRRN4
2.74e-27FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_7dc77def4476ab0c11fea236ae43c943p@chr19:56091499..56091517, -
2.74e-27FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_7dc77def4476ab0c11fea236ae43c943p@chr19:56091499..56091517, -
2.78e-26FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_994cfd0749a5200c27eec34fd5943fa8p@chr9:112260040..112260045, +
2.78e-26FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_994cfd0749a5200c27eec34fd5943fa8p@chr9:112260040..112260045, +
4.63e-26FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_9869e60e65d4bdd24bbb20b9a919c6b2p@chr22:30645170..30645182, -
4.63e-26FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_9869e60e65d4bdd24bbb20b9a919c6b2p@chr22:30645170..30645182, -
7.14e-26FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_5b7c6e884d3b5cdeb5bebfd95a988d4bp@chr8:22419319..22419327, +
7.14e-26FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_5b7c6e884d3b5cdeb5bebfd95a988d4bp@chr8:22419319..22419327, +
9.18e-26FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_ab13ed4df044a7279240145a297d109bp14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_ab13ed4df044a7279240145a297d109bp@chr6:31833005..31833017, -
9.18e-26FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_ab13ed4df044a7279240145a297d109bp15@WT1
9.18e-26FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_ab13ed4df044a7279240145a297d109bp12@TRIM16
9.18e-26FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_ab13ed4df044a7279240145a297d109bp@chr8:28196820..28196830, +
9.18e-26FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_ab13ed4df044a7279240145a297d109bp@chr2:176973165..176973169, -
9.18e-26FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_ab13ed4df044a7279240145a297d109bp@chr20:6031540..6031548, -
9.18e-26FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_ab13ed4df044a7279240145a297d109bp14@PAX2
9.18e-26FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_ab13ed4df044a7279240145a297d109bp@chr6:31833005..31833017, -
9.18e-26FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_ab13ed4df044a7279240145a297d109bp15@WT1
9.18e-26FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_ab13ed4df044a7279240145a297d109bp12@TRIM16
9.18e-26FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_ab13ed4df044a7279240145a297d109bp@chr8:28196820..28196830, +
9.18e-26FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_ab13ed4df044a7279240145a297d109bp@chr2:176973165..176973169, -
9.18e-26FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_ab13ed4df044a7279240145a297d109bp@chr20:6031540..6031548, -
2.37e-25FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_b723d427aa49d8d4ae09730185cac6f3p1@ENST00000523364, p1@uc010kux.1
2.37e-25FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_b723d427aa49d8d4ae09730185cac6f3p1@ENST00000523364, p1@uc010kux.1
4.38e-25FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_a7f114823e9bb4057c27b5d0a128ebe0p16@HOXA10
4.38e-25FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_a7f114823e9bb4057c27b5d0a128ebe0p16@HOXA10
4.43e-25FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_84bae9d20b21f63a022f209d67871dfbp6@MTMR11
4.43e-25FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_84bae9d20b21f63a022f209d67871dfbp6@MTMR11
7.09e-25FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_2a04df46fae58a4a8fd7f50324b8a291p4@PAX2
7.09e-25FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_2a04df46fae58a4a8fd7f50324b8a291p4@PAX2
3.76e-24FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_bff54df3576c82ca0cb372a0bebc92aep@chr1:46797583..46797614, -
3.76e-24FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_bff54df3576c82ca0cb372a0bebc92aep@chr1:46797583..46797614, -
7.62e-24FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_7571dbf5be948ebf8e3c13cc79764d1ep@chr6:94129519..94129544, +
7.62e-24FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_7571dbf5be948ebf8e3c13cc79764d1ep@chr6:94129519..94129544, +
8.02e-24FFCP PHASE1:Hg19::chr2:693380..693398,+#_e8d9f68c48cbb8670de58bb0d8a6a818p@chr2:693380..693398, +
8.02e-24FFCP PHASE2:Hg19::chr2:693380..693398,+#_e8d9f68c48cbb8670de58bb0d8a6a818p@chr2:693380..693398, +
8.98e-24FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_2060da3a3661b25dbd3ad408204aacc3p@chr2:133426077..133426103, -
8.98e-24FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_2060da3a3661b25dbd3ad408204aacc3p@chr2:133426077..133426103, -
1.99e-23FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_f1c0c1e57e0037c6ea85f0b71927e0a5p5@WT1-AS
1.99e-23FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_f1c0c1e57e0037c6ea85f0b71927e0a5p5@WT1-AS
4.37e-23FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_dddb2f92774814e20a86ad1b2fa0b91cp@chr2:176968471..176968476, -
4.37e-23FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_dddb2f92774814e20a86ad1b2fa0b91cp@chr2:176968471..176968476, -
4.89e-23FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_576e51199a83fa4cad8827f9b050a23bp1@ENST00000469884
4.89e-23FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_576e51199a83fa4cad8827f9b050a23bp1@ENST00000469884

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002321&oldid=1832824"