Personal tools

MacroAPE 1083:TCGCGCYG,motif706

From FANTOM5_SSTAR

Revision as of 12:01, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: TCGCGCYG,motif706,CNhs10643,T:593.0(19.32%),B:7483.8(12.18%),P:1e-29

Motif matrix
POACGT
196.0660.593169.598326.743
20.593511.16680.6480.593
30.5930.593591.2210.593
424.313488.03958.11422.534
5110.8910.593370.625110.891
60.593486.2662.26543.882
7115.042199.24811.86266.257
826.6850.593565.1290.593

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

RSC3#MA0374.1-10.0001965380.09355220.1871047TCGCGCTGCGCGCGG+
abi4#MA0123.120.005523732.6292918TCGCGCTGGGGGGCACCG-
UGA3#MA0410.100.005588122.6599518TCGCGCTGTCCCGCCG-
E2F1#MA0024.120.0062512.9754816TCGCGCTGTTTGGCGC+
TOD6#MA0350.1120.008017583.8163718TCGCGCTGAGGCACAGCTCATCGCGTTTT+
RSC30#MA0375.1-10.008663574.1238617TCGCGCTGCGCGCGCG-
SUT1#MA0399.1-10.008679064.1312317TCGCGCTGCGCGGGG+
MBP1#MA0329.110.0102144.8618816TCGCGCTGTACGCGT-
CRZ1#MA0285.110.01289086.1360418TCGCGCTGGTGGCTTAG-
SNT2#MA0384.130.01345836.4061318TCGCGCTGTGGTAGCGCCG+
MBP1::SWI6#MA0330.100.01404356.6847117TCGCGCTGACGCGTT+
brk#MA0213.110.01858028.8441917TCGCGCTGCTGGCGCC+
CTCF#MA0139.1110.0196779.3662318TCGCGCTGTGGCCACCAGGGGGCGCTA+
SWI4#MA0401.120.0204869.7513516TCGCGCTGTTTCGCGT-
TEA1#MA0405.100.0204869.7513518TCGCGCTGGCGGACAT+