Personal tools

MacroAPE 1083:3-TTTCGAAT

From FANTOM5_SSTAR

Revision as of 13:23, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 3-TTTCGAAT,CNhs11282,BestGuess:PO2F2_si_HM09(0.691254770764022),T:190.0(20.43%),B:3484.4(7.65%),P:1e-34

Motif matrix
POACGT
154.150.190.19135.47
20.190.190.19189.43
30.190.1941.61148.01
40.19189.430.190.19
554.910.19134.710.19
6189.430.190.190.19
7189.430.190.190.19
80.1913.110.19176.51

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

ARR1#MA0274.100.008773654.1762618TTTCGAATATTCAAGT-
mab-3#MA0262.140.008904014.2383118TTTCGAATAATGTTGCGAATT+
XBP1#MA0414.100.009059564.3123517TTTCGAATCCTCGAG-
STB4#MA0391.100.01297726.1771717TTTCGAATTTCCGAG-
vnd#MA0253.100.01658247.8932318TTTCGAATTTTCAAGTG+
CEBPA#MA0102.210.01872738.9141818TTTCGAATATTGCGAAA-