Personal tools

MacroAPE 1083:GAYCAGG,motif573

From FANTOM5_SSTAR

Revision as of 14:20, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: GAYCAGG,motif573,CNhs11768,T:2455.0(62.37%),B:39517.9(53.17%),P:1e-30

Motif matrix
POACGT
12.4552.4552447.6352.455
22447.6352.4552.4552.455
388.381055.652.4551308.515
42.4552057.292.455392.8
51333.065417.35297.055407.53
6488.54588.381868.2559.82
7346.155699.6751406.7152.455

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

ASH1#MA0276.130.001443420.6870690.8054897GATCAGGCCGGATCGGG+
ARR10#MA0121.110.006133512.9195517GATCAGGAGATCCGC+
ECM23#MA0293.130.0118725.6510617GATCAGGAAAGATCTAAA+
TBS1#MA0404.120.01285876.1207616GATCAGGCGGATCCG+
GAT3#MA0301.110.01773818.4433417GATCAGGAGATCTACA+
ESR1#MA0112.2110.01837538.7466317GATCAGGGGGGTCACGGTGACCTGG-
ESR1#MA0112.2100.01871458.9081217GATCAGGAGGTCAGGGTGACCTGGGCC-
GAT4#MA0302.130.02052479.7697717GATCAGGAAAGATCTAAA+