Personal tools

MacroAPE 1083:14-RSCGSWVTCT

From FANTOM5_SSTAR

Revision as of 14:42, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 14-RSCGSWVTCT,CNhs11047,BestGuess:TYY1_f2_HM09(0.585001225521592),T:704.0(25.58%),B:7676.3(17.31%),P:1e-27

Motif matrix
POACGT
1316.09627.456340.73619.712
213.376305.536342.84842.24
325.344591.3647.16840.128
438.7240.128605.4419.712
521.12304.832332.28846.464
6278.784139.392103.488182.336
7168.96190.08247.80897.856
835.236.60848.576583.616
934.496574.46443.64851.392
1023.23229.56819.008632.192

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

CTCF#MA0139.110.004306282.04979110GGCGGAGTCTTAGCGCCCCCTGGTGGCCA-
DAL82#MA0291.1-10.007231553.4422219GGCGGAGTCTGCGCACATT-
HAP5#MA0316.1-20.007983673.8002318GGCGGAGTCTTGGGATCTGATTGGT+
LEU3#MA0324.1-10.01254155.9697519GGCGGAGTCTCCGGTAACGG-
HAP4#MA0315.1-20.01318896.2779118GGCGGAGTCTTCGCCTCTGATTGGT-
ARO80#MA0273.1-10.01383466.5852619GGCGGAGTCTGATAATTCTCGGCAAGTATGT+
ARG80#MA0271.1-40.01405846.6917916GGCGGAGTCTGCGTCT-
abi4#MA0123.110.01975499.4033419GGCGGAGTCTCGGTGCCCCC+
Trl#MA0205.1-10.01975499.4033419GGCGGAGTCTTTGCTCTCTC+