Personal tools

MacroAPE 1083:9-ACTTMCTHC

From FANTOM5_SSTAR

Revision as of 14:48, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 9-ACTTMCTHC,CNhs13493,BestGuess:EP300.p2.SwissRegulon.nucfreq(0.665506750413533),T:2818.0(39.99%),B:12528.2(29.94%),P:1e-71

Motif matrix
POACGT
11685.1642.818859.49270.528
22.8181620.35321.252873.58
3442.426357.886758.0421259.646
42.818735.498594.5981485.086
51287.826890.488639.6862.818
62.8182744.7322.81867.632
747.9062.8182.8182764.458
8859.49794.67642.271124.382
91028.571704.8981.7222.818

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

SPI1#MA0080.200.00102210.4865190.545787ACTTACTTCACTTCCT-
ELF5#MA0136.110.00114660.545780.545788ACTTACTTCTACTTCCTT+
ARO80#MA0273.100.004270382.032719ACTTACTTCACATACTTGCCGAGAATTATC-
Nkx3-2#MA0122.1-10.009072514.3185218ACTTACTTCTCCACTTAA-
Foxa2#MA0047.140.01042724.9633618ACTTACTTCCAATATTTACTT+
FOXC1#MA0032.110.01186215.6463717ACTTACTTCTACTTACC-
GABPA#MA0062.2-10.01284946.1163218ACTTACTTCGCCACTTCCGG-
z#MA0255.100.01321036.2881119ACTTACTTCAATCACTCAA-
YAP1#MA0415.100.02089229.944719ACTTACTTCATTTGCTTACGTAAGCTCGT+