Personal tools

MacroAPE 1083:15-AGRMAACCG

From FANTOM5_SSTAR

Revision as of 14:49, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 15-AGRMAACCG,CNhs11998,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.712534743949132),T:570.0(15.21%),B:4013.1(9.26%),P:1e-30

Motif matrix
POACGT
1560.312.283.423.99
20.5766.69501.031.71
3216.0368.97227.4358.14
4231.99270.180.5767.26
5507.30.5751.310.83
6505.020.5761.562.85
70.57525.540.5743.32
835.91437.1961.5635.34
99.1249.02509.012.85

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Gamyb#MA0034.1-10.0002236380.1064520.2129038AGGCAACCGGACAACCGCC+
BRCA1#MA0133.1-20.00396161.8857217AGGCAACCGACAACAC+
THI2#MA0407.1-10.006827033.2496718AGGCAACCGGGAAACTCTAAGAAC+
Myb#MA0100.1-30.007281583.4660316AGGCAACCGCAACGGCC-
run::Bgb#MA0242.1-30.01012094.8175616AGGCAACCGTAACCGCAA+
RFX1#MA0365.100.01800188.5688518AGGCAACCGTGGCAACC-
Myf#MA0055.100.01817078.6492719AGGCAACCGCAGCAGCTGCTG+