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MCL coexpression mm9:67

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Revision as of 16:09, 10 October 2012 by Autoedit (talk | contribs) (Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0005773;vacuole;7.96331827233826e-05;13030,226421,19141,12514,13040,15442,11984,11432,11605!GO:0009605;response to externa...")
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Phase1 CAGE Peaks

 Short description
Mm9::chr10:116685037..116685048,+p@chr10:116685037..116685048
+
Mm9::chr10:116714486..116714508,-p@chr10:116714486..116714508
-
Mm9::chr10:116714720..116714745,-p@chr10:116714720..116714745
-
Mm9::chr10:116714809..116714859,-p@chr10:116714809..116714859
-
Mm9::chr10:116714942..116714986,-p@chr10:116714942..116714986
-
Mm9::chr10:116715054..116715061,-p@chr10:116715054..116715061
-
Mm9::chr10:116715083..116715118,-p@chr10:116715083..116715118
-
Mm9::chr10:116715155..116715176,-p@chr10:116715155..116715176
-
Mm9::chr10:116715229..116715252,-p@chr10:116715229..116715252
-
Mm9::chr10:116717723..116717760,-p@chr10:116717723..116717760
-
Mm9::chr10:116717791..116717822,-p@chr10:116717791..116717822
-
Mm9::chr10:116719299..116719313,-p2@Lyz2
Mm9::chr10:122258231..122258235,+p@chr10:122258231..122258235
+
Mm9::chr10:51215823..51215844,+p@chr10:51215823..51215844
+
Mm9::chr10:59742551..59742555,+p@chr10:59742551..59742555
+
Mm9::chr10:59760443..59760447,+p@chr10:59760443..59760447
+
Mm9::chr11:102297834..102297848,+p@chr11:102297834..102297848
+
Mm9::chr11:118254834..118254851,-p@chr11:118254834..118254851
-
Mm9::chr11:19482831..19482837,+p@chr11:19482831..19482837
+
Mm9::chr11:4733117..4733126,-p11@Nf2
Mm9::chr11:48715606..48715630,-p2@Gm5431
Mm9::chr11:48715653..48715703,-p1@Gm5431
Mm9::chr11:67400111..67400120,+p12@Gas7
Mm9::chr11:68310186..68310205,+p@chr11:68310186..68310205
+
Mm9::chr11:69479338..69479345,-p@chr11:69479338..69479345
-
Mm9::chr11:70268058..70268063,-p@chr11:70268058..70268063
-
Mm9::chr11:73203601..73203603,+p@chr11:73203601..73203603
+
Mm9::chr11:82765564..82765596,+p2@Slfn5
Mm9::chr11:82883248..82883252,+p@chr11:82883248..82883252
+
Mm9::chr11:83388559..83388570,-p@chr11:83388559..83388570
-
Mm9::chr11:83462030..83462033,+p@chr11:83462030..83462033
+
Mm9::chr11:88785582..88785590,-p@chr11:88785582..88785590
-
Mm9::chr12:103677300..103677309,-p@chr12:103677300..103677309
-
Mm9::chr12:103678033..103678046,-p4@Lgmn
Mm9::chr12:103982202..103982218,+p4@D230037D09Rik
Mm9::chr12:104681863..104681883,-p1@Ifi27l2a
Mm9::chr12:113998930..113998953,+p2@Pld4
Mm9::chr13:103483676..103483687,+p2@Cd180
Mm9::chr13:103510864..103510868,+p@chr13:103510864..103510868
+
Mm9::chr13:12708349..12708352,-p@chr13:12708349..12708352
-
Mm9::chr13:13485792..13485828,-p1@Gpr137b
Mm9::chr13:13485859..13485864,-p4@Gpr137b
Mm9::chr13:37870253..37870272,+p13@Rreb1
Mm9::chr13:37870281..37870293,+p10@Rreb1
Mm9::chr13:51830013..51830036,-p6@Sema4d
Mm9::chr13:94943950..94943982,+p3@Lhfpl2
Mm9::chr14:31973812..31973825,-p@chr14:31973812..31973825
-
Mm9::chr14:32979290..32979309,+p3@Gm6768
p3@Ncoa4
Mm9::chr14:33599190..33599209,+p1@1810011H11Rik
Mm9::chr14:61928643..61928650,+p2@Arl11
Mm9::chr14:63741343..63741362,+p1@Ctsb
Mm9::chr14:63744321..63744326,+p@chr14:63744321..63744326
+
Mm9::chr14:63754442..63754480,+p@chr14:63754442..63754480
+
Mm9::chr14:63757184..63757197,+p@chr14:63757184..63757197
+
Mm9::chr14:63757252..63757271,-p@chr14:63757252..63757271
-
Mm9::chr14:63760597..63760618,+p@chr14:63760597..63760618
+
Mm9::chr14:63760626..63760672,+p@chr14:63760626..63760672
+
Mm9::chr14:63761120..63761134,+p@chr14:63761120..63761134
+
Mm9::chr14:63761148..63761177,+p@chr14:63761148..63761177
+
Mm9::chr14:63761194..63761212,+p@chr14:63761194..63761212
+
Mm9::chr14:63761239..63761277,+p@chr14:63761239..63761277
+
Mm9::chr14:63761420..63761486,+p@chr14:63761420..63761486
+
Mm9::chr14:63761498..63761539,+p@chr14:63761498..63761539
+
Mm9::chr14:63761543..63761587,+p@chr14:63761543..63761587
+
Mm9::chr14:63762481..63762497,+p@chr14:63762481..63762497
+
Mm9::chr14:73572700..73572716,+p@chr14:73572700..73572716
+
Mm9::chr15:101966696..101966702,+p@chr15:101966696..101966702
+
Mm9::chr15:6519521..6519553,+p@chr15:6519521..6519553
+
Mm9::chr15:78156474..78156489,+p2@Csf2rb
Mm9::chr16:8624020..8624026,-p1@ENSMUST00000118361
Mm9::chr17:24916729..24916744,+p@chr17:24916729..24916744
+
Mm9::chr17:34068106..34068146,+p3@Rgl2
Mm9::chr17:35185413..35185428,-p@chr17:35185413..35185428
-
Mm9::chr17:35309522..35309544,-p3@Aif1
Mm9::chr17:47532329..47532340,-p@chr17:47532329..47532340
-
Mm9::chr17:66355009..66355022,+p@chr17:66355009..66355022
+
Mm9::chr18:36886246..36886269,-p1@Cd14
Mm9::chr18:36886322..36886345,-p2@Cd14
Mm9::chr18:53405272..53405288,+p3@Snx24
Mm9::chr18:61265498..61265544,+p1@Csf1r
Mm9::chr18:61265559..61265564,+p3@Csf1r
Mm9::chr19:10057338..10057342,+p2@Fth1
Mm9::chr19:10057578..10057608,+p@chr19:10057578..10057608
+
Mm9::chr19:10059047..10059073,+p@chr19:10059047..10059073
+
Mm9::chr19:11410542..11410559,-p2@Ms4a7
Mm9::chr19:11410564..11410577,-p3@Ms4a7
Mm9::chr19:11410597..11410614,-p1@Ms4a7
Mm9::chr19:11449978..11450018,+p@chr19:11449978..11450018
+
Mm9::chr19:11450027..11450044,+p@chr19:11450027..11450044
+
Mm9::chr19:12535239..12535273,+p1@Mpeg1
Mm9::chr19:12535522..12535533,+p@chr19:12535522..12535533
+
Mm9::chr19:12535579..12535591,+p@chr19:12535579..12535591
+
Mm9::chr19:12535600..12535650,+p@chr19:12535600..12535650
+
Mm9::chr19:12535662..12535673,+p@chr19:12535662..12535673
+
Mm9::chr19:12539392..12539396,+p@chr19:12539392..12539396
+
Mm9::chr19:17401449..17401453,-p@chr19:17401449..17401453
-
Mm9::chr19:3898848..3898854,-p5@Tcirg1
Mm9::chr19:9077615..9077626,+p@chr19:9077615..9077626
+
Mm9::chr1:130485932..130485944,-p@chr1:130485932..130485944
-
Mm9::chr1:133585348..133585361,+p2@5430435G22Rik
Mm9::chr1:136302911..136302934,+p3@Cyb5r1
Mm9::chr1:136328572..136328601,+p@chr1:136328572..136328601
+
Mm9::chr1:158360163..158360167,-p@chr1:158360163..158360167
-
Mm9::chr1:158604421..158604475,-p1@Tor3a
Mm9::chr1:173159866..173159877,-p@chr1:173159866..173159877
-
Mm9::chr1:173164773..173164781,-p3@Fcer1g
Mm9::chr1:173769825..173769830,+p5@Cd84
Mm9::chr1:62750490..62750508,+p8@Nrp2
Mm9::chr1:6443899..6443911,+p@chr1:6443899..6443911
+
Mm9::chr1:97565062..97565065,+p@chr1:97565062..97565065
+
Mm9::chr2:128845420..128845423,-p@chr2:128845420..128845423
-
Mm9::chr2:91043060..91043091,+p1@Acp2
Mm9::chr3:122563187..122563188,+p@chr3:122563187..122563188
+
Mm9::chr3:145812793..145812807,+p4@Mcoln2
Mm9::chr3:61168714..61168729,+p3@Rap2b
Mm9::chr3:61170439..61170444,+p@chr3:61170439..61170444
+
Mm9::chr3:79335680..79335706,-p@chr3:79335680..79335706
-
Mm9::chr3:79335715..79335726,-p@chr3:79335715..79335726
-
Mm9::chr3:85516241..85516242,+p@chr3:85516241..85516242
+
Mm9::chr3:95330699..95330719,+p2@Ctss
Mm9::chr3:95330722..95330733,+p3@Ctss
Mm9::chr3:95330741..95330793,+p1@Ctss
Mm9::chr3:95349443..95349463,+p@chr3:95349443..95349463
+
Mm9::chr3:95350717..95350726,+p@chr3:95350717..95350726
+
Mm9::chr3:95353970..95353982,+p@chr3:95353970..95353982
+
Mm9::chr4:130378637..130378641,+p@chr4:130378637..130378641
+
Mm9::chr4:132119966..132119991,+p2@Ptafr
Mm9::chr4:132119997..132120008,+p3@Ptafr
Mm9::chr4:133683713..133683726,-p@chr4:133683713..133683726
-
Mm9::chr4:133683866..133683888,-p@chr4:133683866..133683888
-
Mm9::chr4:138847516..138847537,+p@chr4:138847516..138847537
+
Mm9::chr4:149944185..149944206,-p@chr4:149944185..149944206
-
Mm9::chr4:149944309..149944330,+p@chr4:149944309..149944330
+
Mm9::chr4:19635686..19635689,-p@chr4:19635686..19635689
-
Mm9::chr4:43467436..43467448,-p2@Cd72
p2@LOC100504743
Mm9::chr4:66488769..66488800,+p2@Tlr4
Mm9::chr4:66488806..66488827,+p4@Tlr4
Mm9::chr4:93001523..93001536,+p@chr4:93001523..93001536
+
Mm9::chr4:98907215..98907238,+p@chr4:98907215..98907238
+
Mm9::chr5:101148682..101148693,-p2@Hpse
Mm9::chr5:148404049..148404050,-p@chr5:148404049..148404050
-
Mm9::chr5:34886026..34886078,+p3@Sh3bp2
Mm9::chr5:36391304..36391309,+p@chr5:36391304..36391309
+
Mm9::chr6:116623789..116623807,-p2@Rassf4
Mm9::chr6:116623808..116623871,-p1@Rassf4
Mm9::chr6:121293403..121293432,+p9@Slc6a12
Mm9::chr6:122527813..122527820,+p@chr6:122527813..122527820
+
Mm9::chr6:122552331..122552362,-p2@Apobec1
Mm9::chr6:122552363..122552418,-p1@Apobec1
Mm9::chr6:122552422..122552440,-p3@Apobec1
Mm9::chr6:122798625..122798629,-p@chr6:122798625..122798629
-
Mm9::chr6:122806040..122806076,-p2@C3ar1
Mm9::chr6:122806086..122806107,-p1@C3ar1
Mm9::chr6:122806115..122806128,-p4@C3ar1
Mm9::chr6:122806169..122806181,-p3@C3ar1
Mm9::chr6:123217110..123217141,+p@chr6:123217110..123217141
+
Mm9::chr6:124758954..124758974,+p2@Spsb2
Mm9::chr6:125482610..125482621,+p3@Vwf
Mm9::chr6:137359267..137359293,+p6@Ptpro
Mm9::chr6:137359507..137359545,+p@chr6:137359507..137359545
+
Mm9::chr6:15677809..15677814,+p5@Mdfic
Mm9::chr6:34813130..34813183,+p1@Tmem140
Mm9::chr6:37755972..37755979,+p1@uc009bjh.1
Mm9::chr6:48989609..48989612,+p@chr6:48989609..48989612
+
Mm9::chr6:48993382..48993389,+p@chr6:48993382..48993389
+
Mm9::chr6:49773673..49773685,+p@chr6:49773673..49773685
+
Mm9::chr6:65094699..65094759,-p1@Hpgds
Mm9::chr6:72499726..72499757,+p4@Capg
Mm9::chr6:85248484..85248489,+p@chr6:85248484..85248489
+
Mm9::chr6:91634055..91634126,+p1@Slc6a6
Mm9::chr6:91634171..91634185,+p2@Slc6a6
Mm9::chr6:91705152..91705168,+p@chr6:91705152..91705168
+
Mm9::chr6:91708104..91708116,+p@chr6:91708104..91708116
+
Mm9::chr6:97757008..97757061,+p1@Mitf
Mm9::chr7:108993814..108993853,-p1@Folr2
Mm9::chr7:134040986..134040997,-p8@Tmem219
Mm9::chr7:135273050..135273088,+p1@Itgax
Mm9::chr7:26472283..26472298,-p@chr7:26472283..26472298
-
Mm9::chr7:29692313..29692318,-p11@Actn4
Mm9::chr7:29692368..29692386,-p5@Actn4
Mm9::chr7:31145621..31145622,+p@chr7:31145621..31145622
+
Mm9::chr7:31998362..31998369,+p@chr7:31998362..31998369
+
Mm9::chr7:4014728..4014741,-p3@Lair1
Mm9::chr7:4014757..4014790,-p1@Lair1
Mm9::chr7:4014797..4014812,-p2@Lair1
Mm9::chr7:4225757..4225765,+p1@Pira6
Mm9::chr8:108515614..108515633,-p1@Dpep2
Mm9::chr8:108515641..108515652,-p2@Dpep2
Mm9::chr8:40728023..40728027,-p1@Msr1
Mm9::chr8:74103162..74103199,+p6@Slc27a1
Mm9::chr8:74103205..74103219,+p15@Slc27a1
Mm9::chr8:74104328..74104345,+p11@Slc27a1
Mm9::chr9:107877953..107877962,+p7@Uba7
Mm9::chr9:108961730..108961773,-p1@Trex1
Mm9::chr9:37062966..37062977,-p3@Slc37a2
Mm9::chr9:45214018..45214092,+p8@Fxyd2
Mm9::chr9:7347404..7347410,+p1@Mmp12
Mm9::chrX:106302357..106302360,+p@chrX:106302357..106302360
+
Mm9::chrX:131135467..131135504,-p1@Gla
Mm9::chrX:163645262..163645275,-p@chrX:163645262..163645275
-
Mm9::chrX:163645891..163645899,-p@chrX:163645891..163645899
-
Mm9::chrX:163702149..163702198,-p1@Tlr8
Mm9::chrX:163768413..163768435,-p2@Tlr7
Mm9::chrX:163768441..163768511,-p1@Tlr7
Mm9::chrX:71526951..71526994,-p1@Dnase1l1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005773vacuole7.96331827233826e-05
GO:0009605response to external stimulus9.634207924204e-05
GO:0005764lysosome0.000109926465810067
GO:0000323lytic vacuole0.000109926465810067
GO:0006954inflammatory response0.000402273609244876
GO:0009611response to wounding0.000415536642216724
GO:0042330taxis0.000472534034658768
GO:0006935chemotaxis0.000472534034658768
GO:0051017actin filament bundle formation0.00189735782855678
GO:0016020membrane0.00323703599937773
GO:0007626locomotory behavior0.014355133139629
GO:0044425membrane part0.014355133139629
GO:0031252leading edge0.019145004669026
GO:0001726ruffle0.0239854496757343
GO:0030036actin cytoskeleton organization and biogenesis0.0254344297798872
GO:0008092cytoskeletal protein binding0.0254344297798872
GO:0045087innate immune response0.0267628927679534
GO:0030029actin filament-based process0.0272351798690272
GO:0008154actin polymerization and/or depolymerization0.0272351798690272
GO:0007015actin filament organization0.0272351798690272
GO:0006955immune response0.032818333823859
GO:0006950response to stress0.0351299447563783
GO:0005886plasma membrane0.037118877286908
GO:0045576mast cell activation0.0411720031105915
GO:0006952defense response0.0421391917310396
GO:0007040lysosome organization and biogenesis0.0421391917310396
GO:0042221response to chemical stimulus0.0421391917310396
GO:0007610behavior0.0421391917310396
GO:0051270regulation of cell motility0.0421391917310396
GO:0032635interleukin-6 production0.0421391917310396
GO:0016021integral to membrane0.0421391917310396
GO:0007242intracellular signaling cascade0.0421391917310396
GO:0040012regulation of locomotion0.0421391917310396
GO:0031224intrinsic to membrane0.0421391917310396
GO:0004536deoxyribonuclease activity0.0421391917310396
GO:0051016barbed-end actin filament capping0.0421391917310396
GO:0005328neurotransmitter:sodium symporter activity0.0421391917310396
GO:0002376immune system process0.0421391917310396
GO:0030835negative regulation of actin filament depolymerization0.0421391917310396
GO:0007033vacuole organization and biogenesis0.0421391917310396
GO:0051693actin filament capping0.0421391917310396
GO:0005326neurotransmitter transporter activity0.0421391917310396
GO:0003779actin binding0.0421391917310396
GO:0030834regulation of actin filament depolymerization0.0421391917310396
GO:0030042actin filament depolymerization0.0421391917310396
GO:0045807positive regulation of endocytosis0.0421391917310396
GO:0006508proteolysis0.0421391917310396
GO:0044421extracellular region part0.0421391917310396
GO:0005884actin filament0.0421391917310396
GO:0033032regulation of myeloid cell apoptosis0.0421391917310396
GO:0002720positive regulation of cytokine production during immune response0.0421391917310396
GO:0033028myeloid cell apoptosis0.0421391917310396
GO:0032558adenyl deoxyribonucleotide binding0.0421391917310396
GO:0031143pseudopodium0.0421391917310396
GO:0045368positive regulation of interleukin-13 biosynthetic process0.0421391917310396
GO:0033025regulation of mast cell apoptosis0.0421391917310396
GO:0005368taurine transmembrane transporter activity0.0421391917310396
GO:0001761beta-alanine transmembrane transporter activity0.0421391917310396
GO:0006127glycerophosphate shuttle0.0421391917310396
GO:0007035vacuolar acidification0.0421391917310396
GO:0048549positive regulation of pinocytosis0.0421391917310396
GO:0015168glycerol transmembrane transporter activity0.0421391917310396
GO:0001762beta-alanine transport0.0421391917310396
GO:0015665alcohol transmembrane transporter activity0.0421391917310396
GO:0045362positive regulation of interleukin-1 biosynthetic process0.0421391917310396
GO:0019782ISG15 activating enzyme activity0.0421391917310396
GO:0030305heparanase activity0.0421391917310396
GO:0048548regulation of pinocytosis0.0421391917310396
GO:0004992platelet activating factor receptor activity0.0421391917310396
GO:0033024mast cell apoptosis0.0421391917310396
GO:0042222interleukin-1 biosynthetic process0.0421391917310396
GO:0032554purine deoxyribonucleotide binding0.0421391917310396
GO:0033033negative regulation of myeloid cell apoptosis0.0421391917310396
GO:0045360regulation of interleukin-1 biosynthetic process0.0421391917310396
GO:0004234macrophage elastase activity0.0421391917310396
GO:0015169glycerol-3-phosphate transmembrane transporter activity0.0421391917310396
GO:0004218cathepsin S activity0.0421391917310396
GO:0004213cathepsin B activity0.0421391917310396
GO:0015794glycerol-3-phosphate transport0.0421391917310396
GO:0032552deoxyribonucleotide binding0.0421391917310396
GO:0004557alpha-galactosidase activity0.0421391917310396
GO:0033026negative regulation of mast cell apoptosis0.0421391917310396
GO:0015734taurine transport0.0421391917310396
GO:0032733positive regulation of interleukin-10 production0.0421391917310396
GO:0033023mast cell homeostasis0.0421391917310396
GO:0015793glycerol transport0.0421391917310396
GO:0045366regulation of interleukin-13 biosynthetic process0.0421391917310396
GO:0015166polyol transmembrane transporter activity0.0421391917310396
GO:0002431Fc receptor mediated stimulatory signaling pathway0.0421391917310396
GO:0032765positive regulation of mast cell cytokine production0.0421391917310396
GO:0051015actin filament binding0.0435049872995941
GO:0008553hydrogen-exporting ATPase activity, phosphorylative mechanism0.0435049872995941
GO:0004197cysteine-type endopeptidase activity0.0465439713379019
GO:0048858cell projection morphogenesis0.0465439713379019
GO:0032990cell part morphogenesis0.0465439713379019
GO:0030030cell projection organization and biogenesis0.0465439713379019
GO:0010324membrane invagination0.0477253947078875
GO:0006897endocytosis0.0477253947078875



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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