MCL coexpression mm9:333

Phase1 CAGE Peaks

	Short description
Mm9::chr11:43827555..43827566,+	p@chr11:43827555..43827566 +
Mm9::chr11:61392802..61392849,-	p@chr11:61392802..61392849 -
Mm9::chr14:124059337..124059431,+	p1@Itgbl1
Mm9::chr14:124059443..124059455,+	p4@Itgbl1
Mm9::chr14:124059487..124059506,+	p3@Itgbl1
Mm9::chr14:124059513..124059533,+	p2@Itgbl1
Mm9::chr1:74115215..74115251,-	p@chr1:74115215..74115251 -
Mm9::chr2:26934891..26934905,+	p1@Adamtsl2
Mm9::chr2:79879159..79879174,-	p9@Pde1a
Mm9::chr3:144423693..144423710,-	p1@Clca1
Mm9::chr3:53064740..53064776,+	p@chr3:53064740..53064776 +
Mm9::chr3:53065121..53065127,+	p@chr3:53065121..53065127 +
Mm9::chr6:35276123..35276155,-	p1@Fam180a
Mm9::chr6:48791632..48791643,+	p3@Tmem176a
Mm9::chr7:117773040..117773045,+	p@chr7:117773040..117773045 +
Mm9::chr8:11218764..11218769,-	p@chr8:11218764..11218769 -
Mm9::chr8:11239175..11239178,-	p@chr8:11239175..11239178 -
Mm9::chr8:11354318..11354330,+	p@chr8:11354318..11354330 +
Mm9::chr8:11398668..11398681,+	p@chr8:11398668..11398681 +
Mm9::chr8:11398757..11398768,+	p@chr8:11398757..11398768 +
Mm9::chr8:11448154..11448168,+	p@chr8:11448154..11448168 +
Mm9::chr8:55162490..55162506,+	p2@Vegfc
Mm9::chr8:55162518..55162537,+	p1@Vegfc
Mm9::chr9:56096674..56096680,+	p@chr9:56096674..56096680 +

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0005229	intracellular calcium activated chloride channel activity	0.0387562788834409
GO:0043185	vascular endothelial growth factor receptor 3 binding	0.0387562788834409
GO:0015698	inorganic anion transport	0.0387562788834409
GO:0006820	anion transport	0.0387562788834409
GO:0005172	vascular endothelial growth factor receptor binding	0.0387562788834409
GO:0005587	collagen type IV	0.0387562788834409
GO:0030935	sheet-forming collagen	0.0387562788834409
GO:0002052	positive regulation of neuroblast proliferation	0.0395571990453073

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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