MCL coexpression mm9:739

Phase1 CAGE Peaks

	Short description
Mm9::chr17:80527211..80527214,+	p@chr17:80527211..80527214 +
Mm9::chr1:152313321..152313366,-	p1@Prg4
Mm9::chr3:14863428..14863446,+	p4@Car3
Mm9::chr3:14863451..14863467,+	p2@Car3
Mm9::chr5:24606442..24606475,-	p2@Prkag2
Mm9::chr7:147946643..147946679,-	p@chr7:147946643..147946679 -
Mm9::chr7:28377746..28377764,+	p9@Akt2
Mm9::chr7:28377795..28377809,+	p10@Akt2
Mm9::chr7:52744144..52744172,-	p1@Dhdh
Mm9::chr7:52744205..52744230,-	p2@Dhdh

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0047115	trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity	0.0154495151481948
GO:0004034	aldose 1-epimerase activity	0.0154495151481948
GO:0016151	nickel ion binding	0.0411817804150184
GO:0004679	AMP-activated protein kinase activity	0.0432231042462781
GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	0.0432231042462781

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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