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MCL coexpression mm9:260

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:59837508..59837512,+p@chr10:59837508..59837512
+
Mm9::chr10:61969030..61969043,-p@chr10:61969030..61969043
-
Mm9::chr11:70464139..70464152,+p@chr11:70464139..70464152
+
Mm9::chr11:82877968..82877973,+p@chr11:82877968..82877973
+
Mm9::chr11:82877992..82878000,+p@chr11:82877992..82878000
+
Mm9::chr15:78402228..78402241,+p@chr15:78402228..78402241
+
Mm9::chr17:21587400..21587411,+p@chr17:21587400..21587411
+
Mm9::chr17:35399747..35399768,+p3@H2-D1
Mm9::chr1:163001536..163001548,-p@chr1:163001536..163001548
-
Mm9::chr1:58770164..58770176,+p4@Cflar
Mm9::chr1:92949614..92949625,-p@chr1:92949614..92949625
-
Mm9::chr1:92950423..92950427,-p@chr1:92950423..92950427
-
Mm9::chr1:92950550..92950569,+p@chr1:92950550..92950569
+
Mm9::chr1:92953199..92953213,+p@chr1:92953199..92953213
+
Mm9::chr1:92953250..92953273,+p@chr1:92953250..92953273
+
Mm9::chr1:92954465..92954475,+p@chr1:92954465..92954475
+
Mm9::chr2:73301971..73301982,-p@chr2:73301971..73301982
-
Mm9::chr2:73323739..73323761,-p12@Wipf1
Mm9::chr2:94278218..94278232,-p2@Api5
Mm9::chr4:8840833..8840836,-p@chr4:8840833..8840836
-
Mm9::chr5:108155037..108155060,-p2@Gfi1
Mm9::chr5:32000704..32000714,-p@chr5:32000704..32000714
-
Mm9::chr5:32436063..32436081,+p@chr5:32436063..32436081
+
Mm9::chr5:32436178..32436190,+p@chr5:32436178..32436190
+
Mm9::chr7:109398056..109398073,-p@chr7:109398056..109398073
-
Mm9::chr7:31203177..31203188,+p@chr7:31203177..31203188
+
Mm9::chr7:31204934..31204968,+p@chr7:31204934..31204968
+
Mm9::chr7:31205383..31205392,-p@chr7:31205383..31205392
-
Mm9::chr7:31206627..31206655,-p@chr7:31206627..31206655
-
Mm9::chr8:129376078..129376081,-p@chr8:129376078..129376081
-
Mm9::chr8:85856266..85856269,-p3@Elmod2
Mm9::chr9:66767453..66767517,-p1@Rab8b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0042660positive regulation of cell fate specification0.0327773654156251
GO:0042659regulation of cell fate specification0.0327773654156251
GO:0010453regulation of cell fate commitment0.0327773654156251
GO:0009996negative regulation of cell fate specification0.0327773654156251
GO:0010454negative regulation of cell fate commitment0.0327773654156251
GO:0043154negative regulation of caspase activity0.0382809443418322
GO:0007638mechanosensory behavior0.0382809443418322
GO:0043066negative regulation of apoptosis0.0382809443418322
GO:0043069negative regulation of programmed cell death0.0382809443418322
GO:0005522profilin binding0.0491283492655764



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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