MCL coexpression mm9:490
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr11:97643723..97643734,- | p2@LOC100044627 p2@Rpl23 |
| Mm9::chr12:29320779..29320817,- | p1@Rps7 |
| Mm9::chr14:25309900..25309911,+ | p2@LOC677113 p2@Rps24 |
| Mm9::chr15:34372984..34373027,- | p1@Gm12191 p1@Gm6109 p1@Gm7429 p1@Rpl30-ps10 p1@Rpl30 |
| Mm9::chr16:55966451..55966484,+ | p3@Rpl24 p3@Zbtb11 |
| Mm9::chr2:32817185..32817212,+ | p1@Rpl12 |
| Mm9::chr3:85946564..85946580,- | p2@Rps3a |
| Mm9::chr3:85946606..85946611,- | p3@Rps3a |
| Mm9::chr4:86503269..86503319,- | p1@Gm13654 p1@LOC639593 p1@Rps6 |
| Mm9::chr5:65782647..65782690,- | p1@Gm5451 p1@Rpl9 |
| Mm9::chr6:115758783..115758797,- | p2@Gm6251 p2@LOC100504872 p2@Rpl32 |
| Mm9::chr7:123477646..123477702,- | p1@Gm12270 p1@Gm15483 p1@Gm6834 p1@Rps13 |
| Mm9::chr7:52379725..52379769,- | p1@Rps11 |
| Mm9::chr8:125626259..125626320,+ | p1@Gm10071 p1@Gm12918 p1@Gm15710 p1@Rpl13 |
| Mm9::chr9:44215712..44215766,+ | p1@Gm6988 p1@Rps25 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | 1.1560965530981e-11 |
| GO:0005840 | ribosome | 1.1560965530981e-11 |
| GO:0006412 | translation | 2.47125359463791e-09 |
| GO:0030529 | ribonucleoprotein complex | 2.47125359463791e-09 |
| GO:0005830 | cytosolic ribosome (sensu Eukaryota) | 6.28824516811436e-09 |
| GO:0009059 | macromolecule biosynthetic process | 1.51370744461185e-08 |
| GO:0044249 | cellular biosynthetic process | 6.13456154576301e-08 |
| GO:0044445 | cytosolic part | 6.13456154576301e-08 |
| GO:0042254 | ribosome biogenesis and assembly | 1.6730756480992e-07 |
| GO:0009058 | biosynthetic process | 2.90028914512514e-07 |
| GO:0022613 | ribonucleoprotein complex biogenesis and assembly | 7.4709628513972e-07 |
| GO:0043232 | intracellular non-membrane-bound organelle | 1.01014948585804e-06 |
| GO:0043228 | non-membrane-bound organelle | 1.01014948585804e-06 |
| GO:0032991 | macromolecular complex | 5.48773926092803e-06 |
| GO:0005829 | cytosol | 5.54327868465435e-06 |
| GO:0044267 | cellular protein metabolic process | 2.60624487579232e-05 |
| GO:0044260 | cellular macromolecule metabolic process | 2.60624487579232e-05 |
| GO:0010467 | gene expression | 2.60624487579232e-05 |
| GO:0019538 | protein metabolic process | 2.83025096999369e-05 |
| GO:0044444 | cytoplasmic part | 5.50534752153308e-05 |
| GO:0006996 | organelle organization and biogenesis | 0.000423234878212024 |
| GO:0003723 | RNA binding | 0.00105955097781562 |
| GO:0005737 | cytoplasm | 0.00128464468842842 |
| GO:0043170 | macromolecule metabolic process | 0.00128464468842842 |
| GO:0044238 | primary metabolic process | 0.00286419718910655 |
| GO:0044237 | cellular metabolic process | 0.00286419718910655 |
| GO:0016043 | cellular component organization and biogenesis | 0.00562950163876434 |
| GO:0043229 | intracellular organelle | 0.00562950163876434 |
| GO:0043226 | organelle | 0.00562950163876434 |
| GO:0005843 | cytosolic small ribosomal subunit (sensu Eukaryota) | 0.00765632666923851 |
| GO:0019843 | rRNA binding | 0.0121575059345522 |
| GO:0044424 | intracellular part | 0.0148822751252279 |
| GO:0015935 | small ribosomal subunit | 0.0148822751252279 |
| GO:0005622 | intracellular | 0.0173222684612825 |
| GO:0033279 | ribosomal subunit | 0.0288723918971308 |
| GO:0005730 | nucleolus | 0.0481465775613396 |
Relative expression of the co-expression cluster over median <br>Analyst:
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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
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