Personal tools

MCL coexpression mm9:56

From FANTOM5_SSTAR

Revision as of 12:36, 11 October 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:18324783..18324789,-p@chr10:18324783..18324789
-
Mm9::chr10:21130385..21130393,-p@chr10:21130385..21130393
-
Mm9::chr10:59740287..59740290,+p6@Psap
Mm9::chr10:77774760..77774775,-p@chr10:77774760..77774775
-
Mm9::chr10:8623763..8623773,+p@chr10:8623763..8623773
+
Mm9::chr11:106349732..106349749,-p@chr11:106349732..106349749
-
Mm9::chr11:116393200..116393210,+p9@Sphk1
Mm9::chr11:4138110..4138119,+p@chr11:4138110..4138119
+
Mm9::chr11:69697783..69697792,+p@chr11:69697783..69697792
+
Mm9::chr11:78798449..78798459,-p3@Lgals9
Mm9::chr11:97668125..97668129,+p17@Lasp1
Mm9::chr12:109544201..109544213,+p3@Hhipl1
Mm9::chr12:110073996..110074002,-p5@Slc25a29
Mm9::chr12:110124009..110124018,-p@chr12:110124009..110124018
-
Mm9::chr12:110124093..110124101,-p@chr12:110124093..110124101
-
Mm9::chr12:111517438..111517441,+p1@Dio3
Mm9::chr12:112687750..112687776,+p8@Tnfaip2
Mm9::chr12:113345503..113345513,+p@chr12:113345503..113345513
+
Mm9::chr12:113348823..113348830,+p@chr12:113348823..113348830
+
Mm9::chr12:113827436..113827477,+p@chr12:113827436..113827477
+
Mm9::chr12:25392676..25392689,+p7@Rrm2
Mm9::chr12:35399411..35399433,-p@chr12:35399411..35399433
-
Mm9::chr12:40701620..40701624,-p@chr12:40701620..40701624
-
Mm9::chr12:76409049..76409066,+p7@Rhoj
Mm9::chr12:8339007..8339020,+p@chr12:8339007..8339020
+
Mm9::chr12:8339024..8339034,+p@chr12:8339024..8339034
+
Mm9::chr13:12892344..12892348,-p1@Prl2c3
p1@Prl2c4
Mm9::chr13:13097658..13097661,-p1@Prl2c2
Mm9::chr13:13123243..13123246,+p@chr13:13123243..13123246
+
Mm9::chr13:27186057..27186060,+p1@Prl3d1
Mm9::chr13:27404479..27404496,+p1@Prl6a1
Mm9::chr13:27434787..27434799,-p@chr13:27434787..27434799
-
Mm9::chr13:27437530..27437548,+p1@Prl8a2
Mm9::chr13:27437553..27437554,+p3@Prl8a2
Mm9::chr13:27437563..27437570,+p2@Prl8a2
Mm9::chr13:27440741..27440750,+p@chr13:27440741..27440750
+
Mm9::chr13:27440876..27440882,+p@chr13:27440876..27440882
+
Mm9::chr13:27445983..27445989,+p@chr13:27445983..27445989
+
Mm9::chr13:27445995..27446000,+p@chr13:27445995..27446000
+
Mm9::chr13:27729434..27729460,+p@chr13:27729434..27729460
+
Mm9::chr13:27732678..27732685,-p@chr13:27732678..27732685
-
Mm9::chr13:27734346..27734351,-p2@Prl7a1
Mm9::chr13:27734353..27734368,-p1@Prl7a1
Mm9::chr13:27734440..27734445,-p3@Prl7a1
Mm9::chr13:27785192..27785201,-p@chr13:27785192..27785201
-
Mm9::chr13:28108079..28108084,+p1@Prl4a1
Mm9::chr13:43250181..43250190,-p@chr13:43250181..43250190
-
Mm9::chr13:56458550..56458566,-p@chr13:56458550..56458566
-
Mm9::chr13:60965734..60965798,-p1@4930486L24Rik
Mm9::chr13:61356706..61356711,-p1@Cts8
Mm9::chr13:61459554..61459559,-p1@Cts7
Mm9::chr14:14765101..14765107,+p1@ENSMUST00000159275
p1@uc007sgd.1
Mm9::chr14:31692502..31692513,+p2@Mustn1
Mm9::chr14:31692719..31692735,+p1@Mustn1
Mm9::chr14:32988838..32988840,+p@chr14:32988838..32988840
+
Mm9::chr14:68411446..68411456,+p@chr14:68411446..68411456
+
Mm9::chr14:68430254..68430261,+p@chr14:68430254..68430261
+
Mm9::chr15:35842946..35842947,-p@chr15:35842946..35842947
-
Mm9::chr15:78342035..78342046,-p@chr15:78342035..78342046
-
Mm9::chr15:79177038..79177047,+p@chr15:79177038..79177047
+
Mm9::chr15:81606702..81606709,+p7@Zc3h7b
Mm9::chr15:95631089..95631097,+p@chr15:95631089..95631097
+
Mm9::chr15:95631126..95631138,+p@chr15:95631126..95631138
+
Mm9::chr16:20316875..20316878,-p@chr16:20316875..20316878
-
Mm9::chr16:20412869..20412872,-p@chr16:20412869..20412872
-
Mm9::chr16:45887600..45887643,-p@chr16:45887600..45887643
-
Mm9::chr16:90831374..90831395,+p1@4931408A02Rik
Mm9::chr16:90831460..90831469,+p5@4931408A02Rik
Mm9::chr16:90846874..90846876,+p3@4931408A02Rik
Mm9::chr16:92596358..92596371,-p@chr16:92596358..92596371
-
Mm9::chr16:92596391..92596400,-p@chr16:92596391..92596400
-
Mm9::chr16:92613000..92613021,+p1@ENSMUST00000148919
Mm9::chr16:92613101..92613124,+p2@ENSMUST00000148919
Mm9::chr16:95920396..95920402,+p@chr16:95920396..95920402
+
Mm9::chr17:29601992..29602002,+p@chr17:29601992..29602002
+
Mm9::chr17:35991777..35991786,+p@chr17:35991777..35991786
+
Mm9::chr17:35991831..35991837,+p@chr17:35991831..35991837
+
Mm9::chr17:46419431..46419442,-p5@Tjap1
Mm9::chr17:47922678..47922688,+p10@Tfeb
Mm9::chr17:8180102..8180104,-p@chr17:8180102..8180104
-
Mm9::chr18:36502582..36502587,+p@chr18:36502582..36502587
+
Mm9::chr18:36502598..36502604,+p@chr18:36502598..36502604
+
Mm9::chr18:64851811..64851817,-p@chr18:64851811..64851817
-
Mm9::chr18:64859703..64859710,-p@chr18:64859703..64859710
-
Mm9::chr18:75120906..75120922,-p1@Lipg
Mm9::chr18:77193634..77193645,+p@chr18:77193634..77193645
+
Mm9::chr19:10722716..10722723,+p@chr19:10722716..10722723
+
Mm9::chr19:27387460..27387465,+p@chr19:27387460..27387465
+
Mm9::chr19:27396249..27396253,+p@chr19:27396249..27396253
+
Mm9::chr19:42313103..42313114,+p@chr19:42313103..42313114
+
Mm9::chr19:53214998..53215015,+p4@Add3
Mm9::chr19:55292056..55292067,-p3@Gucy2g
Mm9::chr1:137376532..137376546,-p@chr1:137376532..137376546
-
Mm9::chr1:63260800..63260818,-p1@Gpr1
Mm9::chr1:63260821..63260838,-p2@Gpr1
Mm9::chr1:63260849..63260860,-p4@Gpr1
Mm9::chr2:105003138..105003155,+p13@Wt1
Mm9::chr2:122426143..122426153,-p@chr2:122426143..122426153
-
Mm9::chr2:131679439..131679489,-p@chr2:131679439..131679489
-
Mm9::chr2:131680192..131680203,-p@chr2:131680192..131680203
-
Mm9::chr2:131680764..131680803,-p@chr2:131680764..131680803
-
Mm9::chr2:131680870..131680891,-p@chr2:131680870..131680891
-
Mm9::chr2:131681104..131681114,+p@chr2:131681104..131681114
+
Mm9::chr2:131681125..131681134,-p@chr2:131681125..131681134
-
Mm9::chr2:131681149..131681176,-p@chr2:131681149..131681176
-
Mm9::chr2:131681188..131681226,-p@chr2:131681188..131681226
-
Mm9::chr2:131681267..131681280,-p@chr2:131681267..131681280
-
Mm9::chr2:131681357..131681366,-p@chr2:131681357..131681366
-
Mm9::chr2:131681543..131681554,-p@chr2:131681543..131681554
-
Mm9::chr2:131681565..131681576,-p@chr2:131681565..131681576
-
Mm9::chr2:131682279..131682289,+p@chr2:131682279..131682289
+
Mm9::chr2:131685475..131685491,-p1@Erv3
Mm9::chr2:131685562..131685563,-p2@Erv3
Mm9::chr2:131736434..131736437,-p@chr2:131736434..131736437
-
Mm9::chr2:155576935..155577020,+p1@Procr
Mm9::chr2:155577060..155577071,+p2@Procr
Mm9::chr2:155577076..155577106,+p4@Procr
Mm9::chr2:166407469..166407519,-p4@Prex1
Mm9::chr2:167813767..167813791,-p@chr2:167813767..167813791
-
Mm9::chr2:169512387..169512392,-p@chr2:169512387..169512392
-
Mm9::chr2:35288301..35288317,-p11@Ggta1
Mm9::chr2:35288345..35288356,-p14@Ggta1
Mm9::chr2:84309658..84309661,-p@chr2:84309658..84309661
-
Mm9::chr2:84314151..84314165,-p2@Tfpi
Mm9::chr2:84314747..84314757,-p7@Tfpi
Mm9::chr3:122687190..122687214,-p2@Usp53
Mm9::chr3:122743969..122743971,-p@chr3:122743969..122743971
-
Mm9::chr3:41227385..41227390,-p@chr3:41227385..41227390
-
Mm9::chr3:41368843..41368855,+p6@Phf17
Mm9::chr3:41368919..41368930,+p7@Phf17
Mm9::chr3:69400213..69400216,-p@chr3:69400213..69400216
-
Mm9::chr3:89171538..89171544,+p@chr3:89171538..89171544
+
Mm9::chr3:90405695..90405731,+p@chr3:90405695..90405731
+
Mm9::chr3:95303813..95303818,+p@chr3:95303813..95303818
+
Mm9::chr3:98618357..98618372,-p1@Hsd3b6
Mm9::chr4:107110285..107110290,-p@chr4:107110285..107110290
-
Mm9::chr4:128938638..128938650,-p8@C77080
Mm9::chr4:132167076..132167081,+p@chr4:132167076..132167081
+
Mm9::chr4:138761115..138761123,+p@chr4:138761115..138761123
+
Mm9::chr4:140462693..140462700,-p@chr4:140462693..140462700
-
Mm9::chr4:35105498..35105509,-p@chr4:35105498..35105509
-
Mm9::chr4:57314347..57314382,-p4@Ptpn3
Mm9::chr4:98369139..98369162,-p@chr4:98369139..98369162
-
Mm9::chr4:99645534..99645538,-p@chr4:99645534..99645538
-
Mm9::chr5:112904886..112904895,-p6@Sez6l
Mm9::chr5:112905373..112905419,+p@chr5:112905373..112905419
+
Mm9::chr5:114000696..114000709,+p5@Wscd2
Mm9::chr5:114000724..114000741,+p4@Wscd2
Mm9::chr5:114862554..114862564,+p@chr5:114862554..114862564
+
Mm9::chr5:143577021..143577040,-p@chr5:143577021..143577040
-
Mm9::chr5:148949686..148949687,+p@chr5:148949686..148949687
+
Mm9::chr6:109824946..109824951,+p@chr6:109824946..109824951
+
Mm9::chr6:116364062..116364071,-p3@Alox5
Mm9::chr6:121292578..121292603,+p7@Slc6a12
Mm9::chr6:121306419..121306434,+p10@Slc6a12
Mm9::chr6:121306807..121306834,+p3@Slc6a12
Mm9::chr6:121306836..121306865,+p4@Slc6a12
Mm9::chr6:121306890..121306895,+p11@Slc6a12
Mm9::chr6:121306897..121306910,+p8@Slc6a12
Mm9::chr6:121306916..121306921,+p12@Slc6a12
Mm9::chr6:121306941..121306944,+p13@Slc6a12
Mm9::chr6:121313700..121313740,+p@chr6:121313700..121313740
+
Mm9::chr6:121315216..121315245,+p@chr6:121315216..121315245
+
Mm9::chr6:121586236..121586255,+p1@A2m
Mm9::chr6:121588306..121588317,+p@chr6:121588306..121588317
+
Mm9::chr6:121591352..121591370,+p@chr6:121591352..121591370
+
Mm9::chr6:121594914..121594945,+p@chr6:121594914..121594945
+
Mm9::chr6:122444228..122444231,-p@chr6:122444228..122444231
-
Mm9::chr6:122448778..122448784,-p@chr6:122448778..122448784
-
Mm9::chr6:137512093..137512098,-p@chr6:137512093..137512098
-
Mm9::chr6:48854959..48854972,+p6@Abp1
Mm9::chr6:48854978..48854990,+p2@Abp1
Mm9::chr6:48855132..48855142,+p11@Abp1
Mm9::chr6:48856155..48856166,+p@chr6:48856155..48856166
+
Mm9::chr6:48857675..48857680,+p10@Abp1
Mm9::chr6:48857706..48857715,+p7@Abp1
Mm9::chr6:48857727..48857754,+p3@Abp1
Mm9::chr6:48857796..48857805,+p8@Abp1
Mm9::chr6:48857811..48857820,+p9@Abp1
Mm9::chr6:48858834..48858844,+p@chr6:48858834..48858844
+
Mm9::chr6:48858846..48858868,+p@chr6:48858846..48858868
+
Mm9::chr6:48879890..48879896,+p1@1600015I10Rik
Mm9::chr6:97528087..97528119,-p@chr6:97528087..97528119
-
Mm9::chr6:97777247..97777258,+p@chr6:97777247..97777258
+
Mm9::chr6:97777273..97777296,+p@chr6:97777273..97777296
+
Mm9::chr6:97830509..97830513,+p@chr6:97830509..97830513
+
Mm9::chr7:109591246..109591266,+p@chr7:109591246..109591266
+
Mm9::chr7:109630203..109630210,-p@chr7:109630203..109630210
-
Mm9::chr7:112702892..112703001,+p1@Smpd1
Mm9::chr7:117431742..117431750,-p@chr7:117431742..117431750
-
Mm9::chr7:117916246..117916268,+p3@Ampd3
Mm9::chr7:117916276..117916281,+p23@Ampd3
Mm9::chr7:117916296..117916307,+p16@Ampd3
Mm9::chr7:128180180..128180187,+p@chr7:128180180..128180187
+
Mm9::chr7:128233450..128233453,+p@chr7:128233450..128233453
+
Mm9::chr7:128233454..128233457,+p@chr7:128233454..128233457
+
Mm9::chr7:134287849..134287865,-p@chr7:134287849..134287865
-
Mm9::chr7:138005328..138005341,+p@chr7:138005328..138005341
+
Mm9::chr7:138079674..138079685,+p3@Htra1
Mm9::chr7:138079686..138079768,+p1@Htra1
Mm9::chr7:138079771..138079782,+p2@Htra1
Mm9::chr7:149674900..149674912,+p20@Lsp1
Mm9::chr7:149674944..149674973,+p7@Lsp1
Mm9::chr7:149675081..149675100,+p@chr7:149675081..149675100
+
Mm9::chr7:149675205..149675233,+p9@Lsp1
Mm9::chr7:150952821..150952833,-p1@Mrgprg
Mm9::chr7:150952861..150952867,-p4@Mrgprg
Mm9::chr7:150952890..150952901,-p2@Mrgprg
Mm9::chr7:150952911..150952917,-p3@Mrgprg
Mm9::chr7:17307303..17307308,+p1@Ceacam9
Mm9::chr7:19303548..19303561,+p1@Psg22
Mm9::chr7:51187042..51187049,+p@chr7:51187042..51187049
+
Mm9::chr7:52444070..52444083,-p@chr7:52444070..52444083
-
Mm9::chr7:52444924..52444936,-p@chr7:52444924..52444936
-
Mm9::chr7:52445017..52445020,-p@chr7:52445017..52445020
-
Mm9::chr7:52445041..52445083,-p@chr7:52445041..52445083
-
Mm9::chr7:56138705..56138713,-p@chr7:56138705..56138713
-
Mm9::chr7:56140179..56140186,+p@chr7:56140179..56140186
+
Mm9::chr7:56142436..56142460,-p@chr7:56142436..56142460
-
Mm9::chr7:78864103..78864107,-p@chr7:78864103..78864107
-
Mm9::chr8:109027975..109027978,+p@chr8:109027975..109027978
+
Mm9::chr8:119592059..119592107,-p@chr8:119592059..119592107
-
Mm9::chr8:119619759..119619775,+p1@Bcmo1
Mm9::chr8:119934552..119934554,+p@chr8:119934552..119934554
+
Mm9::chr8:15726533..15726536,+p@chr8:15726533..15726536
+
Mm9::chr8:15726600..15726608,+p@chr8:15726600..15726608
+
Mm9::chr8:26316320..26316331,-p@chr8:26316320..26316331
-
Mm9::chr8:58953213..58953222,-p@chr8:58953213..58953222
-
Mm9::chr8:84385577..84385585,+p@chr8:84385577..84385585
+
Mm9::chr8:95484926..95484943,+p1@Slc6a2
Mm9::chr9:36239407..36239421,+p1@Gm7257
Mm9::chr9:36239429..36239438,+p2@Gm7257
Mm9::chr9:36283165..36283170,+p1@Gm9513
Mm9::chr9:36289474..36289477,+p@chr9:36289474..36289477
+
Mm9::chr9:40297262..40297271,-p@chr9:40297262..40297271
-
Mm9::chr9:40297312..40297323,-p@chr9:40297312..40297323
-
Mm9::chr9:40297334..40297345,-p@chr9:40297334..40297345
-
Mm9::chr9:40297346..40297350,-p@chr9:40297346..40297350
-
Mm9::chr9:40338947..40338975,-p7@Gramd1b
Mm9::chr9:45587692..45587719,-p@chr9:45587692..45587719
-
Mm9::chr9:96665991..96665999,+p1@uc009rct.1
Mm9::chrX:147480674..147480686,+p9@Fgd1
Mm9::chrX:50467732..50467743,-p5@Plac1
Mm9::chrX:51027816..51027821,+p2@4930502E18Rik
Mm9::chrX:51028013..51028021,+p3@4930502E18Rik
Mm9::chrX:58962772..58962795,+p1@Ldoc1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005179hormone activity3.53735630712569e-05
GO:0016728oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor0.00479577617603402
GO:0004748ribonucleoside-diphosphate reductase activity0.00479577617603402
GO:0004217cathepsin L activity0.00717974037254331
GO:0016725oxidoreductase activity, acting on CH or CH2 groups0.00955446164434195



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:56&oldid=2149342"