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MCL coexpression mm9:83

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:116036017..116036035,-p@chr11:116036017..116036035
-
Mm9::chr11:116036045..116036108,-p@chr11:116036045..116036108
-
Mm9::chr11:116036131..116036135,-p@chr11:116036131..116036135
-
Mm9::chr11:116036168..116036181,-p@chr11:116036168..116036181
-
Mm9::chr11:119006433..119006437,+p@chr11:119006433..119006437
+
Mm9::chr11:119931983..119932000,-p@chr11:119931983..119932000
-
Mm9::chr11:22920346..22920355,+p10@Fam161a
Mm9::chr11:22920464..22920486,+p3@Fam161a
Mm9::chr11:4629861..4629870,+p@chr11:4629861..4629870
+
Mm9::chr11:4629873..4629891,+p@chr11:4629873..4629891
+
Mm9::chr11:4629892..4629897,+p@chr11:4629892..4629897
+
Mm9::chr11:4629901..4629910,+p@chr11:4629901..4629910
+
Mm9::chr11:59623609..59623635,+p1@uc007jez.1
Mm9::chr11:70532446..70532453,+p@chr11:70532446..70532453
+
Mm9::chr11:84991536..84991543,+p@chr11:84991536..84991543
+
Mm9::chr11:86443743..86443748,+p@chr11:86443743..86443748
+
Mm9::chr11:88355137..88355148,-p@chr11:88355137..88355148
-
Mm9::chr12:106057444..106057468,+p@chr12:106057444..106057468
+
Mm9::chr12:33409576..33409586,+p@chr12:33409576..33409586
+
Mm9::chr12:33409587..33409599,+p@chr12:33409587..33409599
+
Mm9::chr12:77710398..77710404,-p@chr12:77710398..77710404
-
Mm9::chr12:77713634..77713647,-p@chr12:77713634..77713647
-
Mm9::chr12:77713649..77713656,-p@chr12:77713649..77713656
-
Mm9::chr12:77713665..77713688,-p@chr12:77713665..77713688
-
Mm9::chr12:77713695..77713715,-p@chr12:77713695..77713715
-
Mm9::chr12:81064726..81064730,+p@chr12:81064726..81064730
+
Mm9::chr13:100181875..100181889,-p@chr13:100181875..100181889
-
Mm9::chr13:63426325..63426329,-p17@Fancc
Mm9::chr13:92036172..92036183,-p@chr13:92036172..92036183
-
Mm9::chr13:95946641..95946647,+p@chr13:95946641..95946647
+
Mm9::chr13:97312509..97312522,-p3@Polk
Mm9::chr14:33015494..33015508,-p2@Timm23
Mm9::chr14:56387663..56387674,+p@chr14:56387663..56387674
+
Mm9::chr14:78274860..78274874,-p2@Dnajc15
Mm9::chr14:78274900..78274915,-p3@Dnajc15
Mm9::chr14:78274934..78274941,-p4@Dnajc15
Mm9::chr15:100029070..100029085,+p@chr15:100029070..100029085
+
Mm9::chr15:27501127..27501149,+p11@Ank
Mm9::chr15:74662523..74662531,-p@chr15:74662523..74662531
-
Mm9::chr15:74665659..74665667,+p@chr15:74665659..74665667
+
Mm9::chr15:74665817..74665834,+p@chr15:74665817..74665834
+
Mm9::chr15:74666224..74666235,+p@chr15:74666224..74666235
+
Mm9::chr15:75494512..75494521,-p@chr15:75494512..75494521
-
Mm9::chr15:75494529..75494571,-p@chr15:75494529..75494571
-
Mm9::chr15:75494574..75494596,-p@chr15:75494574..75494596
-
Mm9::chr15:75494598..75494605,-p@chr15:75494598..75494605
-
Mm9::chr15:75494613..75494620,-p@chr15:75494613..75494620
-
Mm9::chr15:84597304..84597312,+p@chr15:84597304..84597312
+
Mm9::chr16:5227918..5227923,-p@chr16:5227918..5227923
-
Mm9::chr17:34866332..34866342,-p2@C4b
p2@LOC675521
Mm9::chr17:34866825..34866849,-p@chr17:34866825..34866849
-
Mm9::chr17:34938318..34938336,-p@chr17:34938318..34938336
-
Mm9::chr17:34938364..34938400,-p@chr17:34938364..34938400
-
Mm9::chr17:34947033..34947054,-p1@ENSMUST00000160657
Mm9::chr17:34947502..34947541,-p@chr17:34947502..34947541
-
Mm9::chr17:4281603..4281612,-p@chr17:4281603..4281612
-
Mm9::chr17:45729518..45729530,-p26@Slc29a1
Mm9::chr17:46364719..46364729,+p@chr17:46364719..46364729
+
Mm9::chr17:46364752..46364757,+p@chr17:46364752..46364757
+
Mm9::chr17:46364776..46364779,+p@chr17:46364776..46364779
+
Mm9::chr17:80049640..80049644,+p@chr17:80049640..80049644
+
Mm9::chr18:12727769..12727781,+p@chr18:12727769..12727781
+
Mm9::chr19:17469280..17469330,+p@chr19:17469280..17469330
+
Mm9::chr19:21249341..21249350,-p@chr19:21249341..21249350
-
Mm9::chr19:21249362..21249373,-p@chr19:21249362..21249373
-
Mm9::chr19:4477567..4477592,-p2@Syt12
Mm9::chr1:135249087..135249106,+p@chr1:135249087..135249106
+
Mm9::chr1:153900342..153900361,-p@chr1:153900342..153900361
-
Mm9::chr1:173171176..173171190,-p@chr1:173171176..173171190
-
Mm9::chr1:174164754..174164763,-p@chr1:174164754..174164763
-
Mm9::chr1:174164766..174164786,-p@chr1:174164766..174164786
-
Mm9::chr1:55187939..55187952,+p4@Mob4
Mm9::chr1:55188161..55188175,+p3@Mob4
Mm9::chr1:55261747..55261756,+p@chr1:55261747..55261756
+
Mm9::chr1:64984382..64984395,-p@chr1:64984382..64984395
-
Mm9::chr1:64984398..64984410,-p@chr1:64984398..64984410
-
Mm9::chr1:73951774..73951810,-p@chr1:73951774..73951810
-
Mm9::chr1:93205195..93205204,+p@chr1:93205195..93205204
+
Mm9::chr1:93205210..93205219,+p@chr1:93205210..93205219
+
Mm9::chr1:93379594..93379607,+p@chr1:93379594..93379607
+
Mm9::chr2:167686764..167686766,-p@chr2:167686764..167686766
-
Mm9::chr2:25568292..25568300,-p@chr2:25568292..25568300
-
Mm9::chr2:38568356..38568381,-p@chr2:38568356..38568381
-
Mm9::chr3:10346035..10346039,-p4@Zfand1
Mm9::chr3:10346105..10346125,-p2@Zfand1
Mm9::chr3:131301327..131301332,+p@chr3:131301327..131301332
+
Mm9::chr3:131301390..131301407,+p@chr3:131301390..131301407
+
Mm9::chr3:137940712..137940721,+p@chr3:137940712..137940721
+
Mm9::chr3:137940729..137940741,+p@chr3:137940729..137940741
+
Mm9::chr3:27504624..27504639,-p@chr3:27504624..27504639
-
Mm9::chr3:98656478..98656489,+p@chr3:98656478..98656489
+
Mm9::chr3:98685941..98685959,-p@chr3:98685941..98685959
-
Mm9::chr4:107029273..107029290,+p@chr4:107029273..107029290
+
Mm9::chr4:125024195..125024205,-p@chr4:125024195..125024205
-
Mm9::chr4:125024207..125024219,-p@chr4:125024207..125024219
-
Mm9::chr4:125024230..125024240,-p@chr4:125024230..125024240
-
Mm9::chr4:134452224..134452234,-p@chr4:134452224..134452234
-
Mm9::chr4:134452244..134452255,-p@chr4:134452244..134452255
-
Mm9::chr4:134453151..134453160,-p@chr4:134453151..134453160
-
Mm9::chr4:137273245..137273270,+p@chr4:137273245..137273270
+
Mm9::chr4:141313262..141313310,+p@chr4:141313262..141313310
+
Mm9::chr4:65069010..65069019,+p@chr4:65069010..65069019
+
Mm9::chr4:81007367..81007404,-p@chr4:81007367..81007404
-
Mm9::chr5:122698093..122698102,-p@chr5:122698093..122698102
-
Mm9::chr5:125757526..125757535,-p@chr5:125757526..125757535
-
Mm9::chr5:125774432..125774438,+p@chr5:125774432..125774438
+
Mm9::chr5:125780779..125780797,+p@chr5:125780779..125780797
+
Mm9::chr5:125784661..125784689,-p4@Scarb1
Mm9::chr5:125821381..125821397,-p1@Scarb1
Mm9::chr5:21407397..21407419,+p@chr5:21407397..21407419
+
Mm9::chr5:30926210..30926217,+p@chr5:30926210..30926217
+
Mm9::chr6:147192306..147192315,-p1@ENSMUST00000153521
Mm9::chr6:147192316..147192328,-p2@ENSMUST00000153786
Mm9::chr6:147192336..147192358,-p1@ENSMUST00000153786
Mm9::chr6:34362117..34362128,+p3@Akr1b7
Mm9::chr6:34362353..34362373,+p1@Akr1b7
Mm9::chr6:34365415..34365426,-p@chr6:34365415..34365426
-
Mm9::chr6:34365416..34365425,+p@chr6:34365416..34365425
+
Mm9::chr6:34365453..34365458,-p@chr6:34365453..34365458
-
Mm9::chr6:34369393..34369409,+p@chr6:34369393..34369409
+
Mm9::chr6:34369431..34369445,-p@chr6:34369431..34369445
-
Mm9::chr6:34369461..34369468,+p@chr6:34369461..34369468
+
Mm9::chr6:34369472..34369483,-p@chr6:34369472..34369483
-
Mm9::chr6:34373020..34373038,-p@chr6:34373020..34373038
-
Mm9::chr6:34373028..34373046,+p@chr6:34373028..34373046
+
Mm9::chr6:34373050..34373065,+p@chr6:34373050..34373065
+
Mm9::chr6:34373075..34373091,+p@chr6:34373075..34373091
+
Mm9::chr6:34373114..34373138,-p@chr6:34373114..34373138
-
Mm9::chr6:37093225..37093246,+p@chr6:37093225..37093246
+
Mm9::chr6:42347324..42347334,+p@chr6:42347324..42347334
+
Mm9::chr6:72311419..72311433,-p5@Rnf181
Mm9::chr7:125994287..125994298,-p@chr7:125994287..125994298
-
Mm9::chr7:134110117..134110151,+p@chr7:134110117..134110151
+
Mm9::chr7:134111083..134111111,+p7@Sez6l2
Mm9::chr7:134835438..134835498,+p@chr7:134835438..134835498
+
Mm9::chr7:150650125..150650135,-p@chr7:150650125..150650135
-
Mm9::chr8:122526620..122526641,+p2@Crispld2
Mm9::chr8:26925679..26925686,+p@chr8:26925679..26925686
+
Mm9::chr8:59096282..59096294,+p@chr8:59096282..59096294
+
Mm9::chr8:87490060..87490068,-p8@Rnaseh2a
Mm9::chr8:87490652..87490665,+p@chr8:87490652..87490665
+
Mm9::chr8:87490682..87490709,+p@chr8:87490682..87490709
+
Mm9::chr8:95484471..95484483,+p3@Slc6a2
Mm9::chr8:95484499..95484515,+p2@Slc6a2
Mm9::chr9:102802533..102802540,+p@chr9:102802533..102802540
+
Mm9::chr9:51751476..51751480,-p@chr9:51751476..51751480
-
Mm9::chr9:51753948..51753951,-p@chr9:51753948..51753951
-
Mm9::chr9:51771653..51771668,-p1@Fdx1
Mm9::chr9:51782912..51782917,-p@chr9:51782912..51782917
-
Mm9::chr9:57872928..57872961,-p@chr9:57872928..57872961
-
Mm9::chr9:57874758..57874769,+p@chr9:57874758..57874769
+
Mm9::chr9:62215838..62215847,+p@chr9:62215838..62215847
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0022891substrate-specific transmembrane transporter activity0.0352286013616755
GO:0051536iron-sulfur cluster binding0.0352286013616755
GO:0051540metal cluster binding0.0352286013616755
GO:0019867outer membrane0.0352286013616755
GO:0016450kappa DNA polymerase activity0.0352286013616755
GO:0030504inorganic diphosphate transmembrane transporter activity0.0352286013616755
GO:0006810transport0.0352286013616755
GO:0005887integral to plasma membrane0.0352286013616755
GO:0031226intrinsic to plasma membrane0.0352286013616755
GO:0022857transmembrane transporter activity0.0352286013616755
GO:0051234establishment of localization0.0352286013616755
GO:0022892substrate-specific transporter activity0.0447886004009721
GO:0005886plasma membrane0.0447886004009721
GO:0044459plasma membrane part0.0459744619974728
GO:0051179localization0.0459744619974728
GO:0043534blood vessel endothelial cell migration0.0459744619974728
GO:0004523ribonuclease H activity0.0459744619974728
GO:0019430removal of superoxide radicals0.0459744619974728
GO:0015844monoamine transport0.0459744619974728



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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