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MCL coexpression mm9:1237

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:20672299..20672310,+p5@Ahi1
Mm9::chr16:72027752..72027771,+p@chr16:72027752..72027771
+
Mm9::chr17:48015995..48016037,-p12@Foxp4
Mm9::chr2:178062247..178062272,+p5@Phactr3
Mm9::chr2:32178983..32179012,-p@chr2:32178983..32179012
-
Mm9::chr5:137972432..137972464,-p15@Gnb2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0048617embryonic foregut morphogenesis0.0274254607533146
GO:0007440foregut morphogenesis0.0274254607533146
GO:0048613embryonic ectodermal gut morphogenesis0.0274254607533146
GO:0048611embryonic ectodermal gut development0.0274254607533146
GO:0048558embryonic gut morphogenesis0.0274254607533146
GO:0048557embryonic digestive tract morphogenesis0.0274254607533146
GO:0007439ectodermal gut development0.0274254607533146
GO:0048567ectodermal gut morphogenesis0.0274254607533146
GO:0048547gut morphogenesis0.0274254607533146
GO:0048566embryonic gut development0.0274254607533146
GO:0048546digestive tract morphogenesis0.0274254607533146
GO:0004864protein phosphatase inhibitor activity0.0309339166018306
GO:0048565gut development0.031478544579051
GO:0019212phosphatase inhibitor activity0.031478544579051
GO:0048562embryonic organ morphogenesis0.0324672658235487
GO:0019888protein phosphatase regulator activity0.0449732511525825
GO:0005834heterotrimeric G-protein complex0.0449732511525825
GO:0019208phosphatase regulator activity0.0450415573124482
GO:0048568embryonic organ development0.0451018725408811



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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