MCL coexpression mm9:490

Phase1 CAGE Peaks

	Short description
Mm9::chr11:97643723..97643734,-	p2@LOC100044627 p2@Rpl23
Mm9::chr12:29320779..29320817,-	p1@Rps7
Mm9::chr14:25309900..25309911,+	p2@LOC677113 p2@Rps24
Mm9::chr15:34372984..34373027,-	p1@Gm12191 p1@Gm6109 p1@Gm7429 p1@Rpl30-ps10 p1@Rpl30
Mm9::chr16:55966451..55966484,+	p3@Rpl24 p3@Zbtb11
Mm9::chr2:32817185..32817212,+	p1@Rpl12
Mm9::chr3:85946564..85946580,-	p2@Rps3a
Mm9::chr3:85946606..85946611,-	p3@Rps3a
Mm9::chr4:86503269..86503319,-	p1@Gm13654 p1@LOC639593 p1@Rps6
Mm9::chr5:65782647..65782690,-	p1@Gm5451 p1@Rpl9
Mm9::chr6:115758783..115758797,-	p2@Gm6251 p2@LOC100504872 p2@Rpl32
Mm9::chr7:123477646..123477702,-	p1@Gm12270 p1@Gm15483 p1@Gm6834 p1@Rps13
Mm9::chr7:52379725..52379769,-	p1@Rps11
Mm9::chr8:125626259..125626320,+	p1@Gm10071 p1@Gm12918 p1@Gm15710 p1@Rpl13
Mm9::chr9:44215712..44215766,+	p1@Gm6988 p1@Rps25

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0003735	structural constituent of ribosome	1.1560965530981e-11
GO:0005840	ribosome	1.1560965530981e-11
GO:0006412	translation	2.47125359463791e-09
GO:0030529	ribonucleoprotein complex	2.47125359463791e-09
GO:0005830	cytosolic ribosome (sensu Eukaryota)	6.28824516811436e-09
GO:0009059	macromolecule biosynthetic process	1.51370744461185e-08
GO:0044249	cellular biosynthetic process	6.13456154576301e-08
GO:0044445	cytosolic part	6.13456154576301e-08
GO:0042254	ribosome biogenesis and assembly	1.6730756480992e-07
GO:0009058	biosynthetic process	2.90028914512514e-07
GO:0022613	ribonucleoprotein complex biogenesis and assembly	7.4709628513972e-07
GO:0043232	intracellular non-membrane-bound organelle	1.01014948585804e-06
GO:0043228	non-membrane-bound organelle	1.01014948585804e-06
GO:0032991	macromolecular complex	5.48773926092803e-06
GO:0005829	cytosol	5.54327868465435e-06
GO:0044267	cellular protein metabolic process	2.60624487579232e-05
GO:0044260	cellular macromolecule metabolic process	2.60624487579232e-05
GO:0010467	gene expression	2.60624487579232e-05
GO:0019538	protein metabolic process	2.83025096999369e-05
GO:0044444	cytoplasmic part	5.50534752153308e-05
GO:0006996	organelle organization and biogenesis	0.000423234878212024
GO:0003723	RNA binding	0.00105955097781562
GO:0005737	cytoplasm	0.00128464468842842
GO:0043170	macromolecule metabolic process	0.00128464468842842
GO:0044238	primary metabolic process	0.00286419718910655
GO:0044237	cellular metabolic process	0.00286419718910655
GO:0016043	cellular component organization and biogenesis	0.00562950163876434
GO:0043229	intracellular organelle	0.00562950163876434
GO:0043226	organelle	0.00562950163876434
GO:0005843	cytosolic small ribosomal subunit (sensu Eukaryota)	0.00765632666923851
GO:0019843	rRNA binding	0.0121575059345522
GO:0044424	intracellular part	0.0148822751252279
GO:0015935	small ribosomal subunit	0.0148822751252279
GO:0005622	intracellular	0.0173222684612825
GO:0033279	ribosomal subunit	0.0288723918971308
GO:0005730	nucleolus	0.0481465775613396

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>

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TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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