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MCL coexpression mm9:1750

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Phase1 CAGE Peaks

 Short description
Mm9::chr1:193141969..193142005,-p1@Nenf
Mm9::chr2:93662694..93662738,-p1@Ext2
Mm9::chr5:137463258..137463284,+p2@Plod3
Mm9::chr6:128305815..128305842,-p2@Tulp3
Mm9::chr6:128305844..128305874,-p1@Tulp3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0050509N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity0.0161051764061131
GO:0050508glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity0.0161051764061131
GO:0008475procollagen-lysine 5-dioxygenase activity0.0161051764061131
GO:0015012heparan sulfate proteoglycan biosynthetic process0.0225423057380206
GO:0030201heparan sulfate proteoglycan metabolic process0.0225423057380206
GO:0043410positive regulation of MAPKKK cascade0.0241498236359184
GO:0030166proteoglycan biosynthetic process0.0268022710415322
GO:0043408regulation of MAPKKK cascade0.0268022710415322
GO:0031418L-ascorbic acid binding0.0268022710415322
GO:0006029proteoglycan metabolic process0.0268022710415322
GO:0015020glucuronosyltransferase activity0.0268022710415322
GO:0005783endoplasmic reticulum0.0268022710415322
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors0.0268022710415322
GO:0001707mesoderm formation0.0268022710415322
GO:0048332mesoderm morphogenesis0.0268022710415322
GO:0001704formation of primary germ layer0.0268022710415322
GO:0044272sulfur compound biosynthetic process0.0268022710415322
GO:0008375acetylglucosaminyltransferase activity0.0268022710415322
GO:0007498mesoderm development0.0414298065478486
GO:0051213dioxygenase activity0.0414706873941803
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen0.0414706873941803
GO:0006790sulfur metabolic process0.0414706873941803
GO:0016701oxidoreductase activity, acting on single donors with incorporation of molecular oxygen0.0414706873941803
GO:0007369gastrulation0.0414706873941803
GO:0009967positive regulation of signal transduction0.0417313724965586
GO:0048729tissue morphogenesis0.0462742073363588
GO:0016051carbohydrate biosynthetic process0.0469265999411267
GO:0008194UDP-glycosyltransferase activity0.0492412841194071



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
ectoderm-derived structure7.73e-0795
ectoderm7.73e-0795
presumptive ectoderm7.73e-0795


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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