NonredundantMotifs:87

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known87
• db :UNIPROBE
• Id :Hic1_primary
• name :SCI09
• score :0.07041977963654947
  
• External refs:

EntrezGene:3090
UniProt:3090

• Internal refs:

EntrezGene:3090

Motif matrix

P0 A C G T 1 0.2752071165809 0.211374939882425 0.250276687437895 0.26314125609878 2 0.135064246282642 0.327571435857793 0.217556292614213 0.319808025245352 3 0.145658589169038 0.242586431078853 0.267178691961949 0.34457628779016 4 0.656519056903772 0.00971214347213005 0.315173854411255 0.0185949452128421 5 0.00226499308241757 0.00475485402566559 0.0016556488560358 0.991324504035881 6 0.0418733705985873 0.00112759896285182 0.955340373987385 0.00165865645117629 7 0.00130551060523905 0.974833528206637 0.0222154754500661 0.00164548573805761 8 0.00197831970448536 0.992066032057098 0.0026384902368037 0.00331715800161292 9 0.921031777705037 0.0723878828148734 0.00123659740789628 0.00534374207219352 10 0.582027364900139 0.211693940233752 0.115736288088923 0.0905424067771862 11 0.00599025897564052 0.927449539126281 0.0283062416107432 0.0382539602873358 12 0.0273740339749871 0.799878575295505 0.0536672800126871 0.119080110716821 13 0.203510085856749 0.191263215579811 0.168997220892226 0.436229477671214 14 0.402252699547531 0.154087334035405 0.291345833237507 0.152314133179557 15 0.20120126991122 0.414412456297076 0.145329799984595 0.239056473807109 16 0.241094098919118 0.332661254970953 0.143464019251261 0.282780626858668