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MCL coexpression mm9:101

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:111409806..111409861,+p1@Krr1
Mm9::chr10:12912902..12912961,-p1@Ltv1
Mm9::chr10:39966797..39966851,-p1@Rpf2
Mm9::chr10:62065009..62065039,-p1@Ddx21
Mm9::chr10:85334560..85334643,+p1@Pwp1
Mm9::chr10:88289517..88289582,-p1@Utp20
Mm9::chr11:104987781..104987833,+p1@Mettl2
Mm9::chr11:106117094..106117151,-p1@Ftsj3
Mm9::chr11:107050569..107050621,-p1@Nol11
Mm9::chr11:17111507..17111576,-p1@Pno1
Mm9::chr11:29447820..29447870,-p1@Gm8430
p1@Rps27a
Mm9::chr11:33063072..33063087,-p1@LOC100046628
p1@Npm1
Mm9::chr11:53138176..53138206,+p1@Zcchc10
Mm9::chr11:55283226..55283244,+p2@G3bp1
Mm9::chr11:74584324..74584378,+p1@Mettl16
Mm9::chr11:74584383..74584409,+p2@Mettl16
Mm9::chr11:74711583..74711608,+p1@Tsr1
Mm9::chr11:79775850..79775875,-p2@Utp6
Mm9::chr11:79775876..79775900,-p1@Utp6
Mm9::chr11:93746974..93747033,-p1@Utp18
Mm9::chr11:93747038..93747055,-p2@Utp18
Mm9::chr12:32339632..32339705,-p1@Dus4l
Mm9::chr12:34114470..34114514,+p1@Twistnb
Mm9::chr12:79963012..79963058,+p1@Eif2s1
Mm9::chr12:79963086..79963100,+p2@Eif2s1
Mm9::chr13:12487629..12487682,+p1@Heatr1
Mm9::chr13:20277191..20277233,+p3@Elmo1
Mm9::chr13:49777487..49777538,+p1@Iars
Mm9::chr13:54691374..54691395,-p2@Nop16
Mm9::chr13:69750887..69750945,+p1@Nsun2
Mm9::chr13:69750946..69750961,+p2@Nsun2
Mm9::chr13:8995250..8995298,-p1@Gtpbp4
Mm9::chr13:99032901..99032975,-p1@Utp15
Mm9::chr13:99660929..99660990,-p2@Tnpo1
Mm9::chr14:121310435..121310475,+p1@Ipo5
Mm9::chr14:31832190..31832228,-p1@Gnl3
Mm9::chr14:62058862..62058878,-p4@Kpna3
Mm9::chr14:64479127..64479198,+p1@Pinx1
Mm9::chr14:76410670..76410738,-p1@Gtf2f2
Mm9::chr14:76510692..76510735,+p1@Nufip1
Mm9::chr14:99498920..99499004,-p1@Dis3
Mm9::chr15:10415645..10415706,-p1@Brix1
Mm9::chr15:94373903..94373945,-p1@Pus7l
Mm9::chr16:11203352..11203405,-p1@Rsl1d1
Mm9::chr16:11254402..11254429,-p4@Gspt1
Mm9::chr16:30587623..30587683,-p1@Lsg1
Mm9::chr16:33967081..33967096,-p1@Umps
Mm9::chr16:43889718..43889754,-p2@Qtrtd1
Mm9::chr16:43889755..43889781,-p1@Qtrtd1
Mm9::chr16:56037841..56037923,-p1@Rg9mtd1
Mm9::chr16:87496068..87496122,-p1@Cct8
Mm9::chr17:17511510..17511558,+p1@Riok2
Mm9::chr17:34077606..34077654,+p1@Wdr46
Mm9::chr17:35472794..35472835,+p1@ENSMUST00000169342
p1@ENSMUST00000174736
Mm9::chr17:71965559..71965599,+p1@Wdr43
Mm9::chr17:79336371..79336414,-p1@Cebpz
Mm9::chr18:32996899..32996920,+p2@Wdr36
Mm9::chr18:32996925..32996961,+p1@Wdr36
Mm9::chr18:35091585..35091639,-p1@Etf1
Mm9::chr18:52625330..52625364,+p1@LOC636713
p1@Srfbp1
Mm9::chr19:11023728..11023767,-p1@Ccdc86
Mm9::chr19:27504297..27504360,-p1@D19Bwg1357e
Mm9::chr19:29175877..29175928,+p1@Rcl1
Mm9::chr19:38893646..38893732,-p1@Noc3l
Mm9::chr19:46150489..46150510,+p1@Nolc1
Mm9::chr1:120218411..120218459,+p1@Mki67ip
Mm9::chr1:123464472..123464482,-p2@Ddx18
Mm9::chr1:123464483..123464529,-p1@Ddx18
Mm9::chr1:181733756..181733833,-p1@Ahctf1
Mm9::chr1:188573163..188573172,-p2@Rrp15
Mm9::chr1:188573183..188573219,-p1@Rrp15
Mm9::chr1:34496700..34496755,+p1@Imp4
Mm9::chr1:45852330..45852360,+p1@Wdr75
Mm9::chr1:59741793..59741867,+p1@Nop58
Mm9::chr1:60154737..60154768,-p2@Wdr12
Mm9::chr1:80722928..80722932,-p@chr1:80722928..80722932
-
Mm9::chr1:88255933..88255956,-p1@Ncl
Mm9::chr2:103601335..103601443,-p1@Nat10
Mm9::chr2:11524819..11524895,-p1@Rbm17
Mm9::chr2:146838749..146838819,+p1@Xrn2
Mm9::chr2:166840783..166840836,+p1@Ddx27
Mm9::chr2:26771880..26771916,+p2@Surf2
Mm9::chr2:28696202..28696272,+p1@Ddx31
Mm9::chr2:29917537..29917563,+p5@Set
Mm9::chr2:29917565..29917598,+p3@Set
Mm9::chr2:69560917..69560933,+p3@Ppig
Mm9::chr2:83484721..83484734,+p3@Zc3h15
Mm9::chr3:121977289..121977333,+p1@Dnttip2
Mm9::chr3:146184360..146184394,-p1@Rpf1
Mm9::chr3:69525918..69525993,+p1@Nmd3
Mm9::chr3:87847020..87847050,+p1@Gpatch4
Mm9::chr3:87847053..87847072,+p2@Gpatch4
Mm9::chr3:99966287..99966337,-p1@Wdr3
Mm9::chr4:118293418..118293504,+p1@Ebna1bp2
Mm9::chr4:124707250..124707314,+p1@Gnl2
Mm9::chr4:138908420..138908442,-p3@Gm5633
p3@Gm9178
p3@Mrto4
Mm9::chr4:155135151..155135218,-p1@Atad3a
Mm9::chr5:108026779..108026803,+p2@Rpap2
Mm9::chr5:110547964..110547966,-p1@ENSMUST00000118871
Mm9::chr5:120566535..120566560,+p2@Rbm19
Mm9::chr5:130293266..130293289,+p1@Cct6a
Mm9::chr5:23289430..23289515,-p1@Pus7
Mm9::chr5:29761209..29761285,+p1@Nom1
Mm9::chr5:34679050..34679108,+p1@Rnf4
Mm9::chr5:35002717..35002787,-p1@Nop14
Mm9::chr5:77380232..77380257,-p2@Ppat
Mm9::chr5:77380585..77380614,-p4@Ppat
Mm9::chr5:88983473..88983520,+p1@Utp3
Mm9::chr5:92864101..92864129,-p1@Nup54
Mm9::chr5:92864140..92864156,-p2@Nup54
Mm9::chr6:117857813..117857850,+p4@Hnrnpf
Mm9::chr6:29114654..29114707,-p1@Rbm28
Mm9::chr6:71859040..71859070,+p1@Polr1a
Mm9::chr6:87788665..87788786,-p1@Isy1
Mm9::chr6:87801005..87801048,-p1@Cnbp
Mm9::chr7:57033704..57033759,+p1@Prmt3
Mm9::chr7:71537100..71537145,-p1@Mphosph10
Mm9::chr8:109417516..109417596,+p1@Cirh1a
Mm9::chr8:124353420..124353471,-p1@Klhdc4
Mm9::chr8:32279171..32279218,-p1@Mak16
Mm9::chr8:69010393..69010438,-p1@1810029B16Rik
Mm9::chr8:69384114..69384186,+p1@Naf1
Mm9::chr9:15110696..15110712,+p1@Taf1d
Mm9::chr9:35367045..35367078,+p1@Pus3
Mm9::chr9:53056168..53056210,-p1@Ddx10
Mm9::chrX:20235576..20235605,+p4@Uba1
Mm9::chrX:45610058..45610105,+p1@Utp14a
Mm9::chrX:72341378..72341448,+p1@Dkc1
Mm9::chrX:72518295..72518311,-p1@ENSMUST00000118416


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005634nucleus7.74805566075103e-20
GO:0042254ribosome biogenesis and assembly5.93289693199556e-15
GO:0005730nucleolus1.57386287719075e-14
GO:0006396RNA processing2.33904421642303e-14
GO:0022613ribonucleoprotein complex biogenesis and assembly6.2042351110841e-14
GO:0016072rRNA metabolic process7.07247633167291e-14
GO:0006364rRNA processing7.07247633167291e-14
GO:0003723RNA binding4.01627328864385e-11
GO:0043231intracellular membrane-bound organelle5.15908546052382e-09
GO:0043227membrane-bound organelle5.15908546052382e-09
GO:0044428nuclear part5.15908546052382e-09
GO:0006996organelle organization and biogenesis6.61117198950514e-09
GO:0006399tRNA metabolic process4.23404797364489e-08
GO:0010467gene expression7.3153160299453e-08
GO:0000166nucleotide binding8.83229883253741e-08
GO:0043229intracellular organelle1.37027571336237e-07
GO:0043226organelle1.37027571336237e-07
GO:0008033tRNA processing1.64667372583702e-07
GO:0031981nuclear lumen2.45401847950981e-07
GO:0016070RNA metabolic process8.10917019599275e-07
GO:0043233organelle lumen1.18409422944702e-06
GO:0031974membrane-enclosed lumen1.18409422944702e-06
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process1.5474653296646e-06
GO:0044424intracellular part1.57948459948422e-06
GO:0005622intracellular2.58253931346923e-06
GO:0003676nucleic acid binding2.79550479654412e-06
GO:0016043cellular component organization and biogenesis1.18321325726083e-05
GO:0004386helicase activity3.52332013460851e-05
GO:0004730pseudouridylate synthase activity8.07151284632236e-05
GO:0030529ribonucleoprotein complex0.00011917114844179
GO:0017076purine nucleotide binding0.000135352089292831
GO:0032553ribonucleotide binding0.000294054228077952
GO:0032555purine ribonucleotide binding0.000294054228077952
GO:0044446intracellular organelle part0.000647546486389189
GO:0043021ribonucleoprotein binding0.000647546486389189
GO:0044422organelle part0.000667666507104959
GO:0005643nuclear pore0.00112833604595401
GO:0030519snoRNP binding0.00139197337308636
GO:0030554adenyl nucleotide binding0.00140435158587496
GO:0046930pore complex0.00148664023757025
GO:0044453nuclear membrane part0.00202975857689722
GO:0032040small subunit processome0.00207668587346777
GO:0031119tRNA pseudouridine synthesis0.00207668587346777
GO:0031965nuclear membrane0.00216192637867521
GO:0005524ATP binding0.00230057620652168
GO:0032559adenyl ribonucleotide binding0.00273439221417802
GO:0006400tRNA modification0.0039324476067269
GO:0008026ATP-dependent helicase activity0.00490351601515433
GO:0001522pseudouridine synthesis0.00645987841891731
GO:0016853isomerase activity0.00649485846505774
GO:0016829lyase activity0.00649485846505774
GO:0043232intracellular non-membrane-bound organelle0.00660711670388541
GO:0043228non-membrane-bound organelle0.00660711670388541
GO:0008168methyltransferase activity0.00714029052142233
GO:0006913nucleocytoplasmic transport0.00735515182542594
GO:0016741transferase activity, transferring one-carbon groups0.0074184022289869
GO:0051169nuclear transport0.0074184022289869
GO:0043170macromolecule metabolic process0.0079935994478548
GO:0008175tRNA methyltransferase activity0.00832152700759631
GO:0043624cellular protein complex disassembly0.00980598753096415
GO:0016836hydro-lyase activity0.0111724731988155
GO:0043241protein complex disassembly0.0112177597219261
GO:0005635nuclear envelope0.0117862381400145
GO:0044237cellular metabolic process0.0119018665912372
GO:0016439tRNA-pseudouridine synthase activity0.0123315610873466
GO:0032984macromolecular complex disassembly0.0123315610873466
GO:0043283biopolymer metabolic process0.012846338578914
GO:0000059protein import into nucleus, docking0.0136243134258624
GO:0016363nuclear matrix0.0136243134258624
GO:0006606protein import into nucleus0.0144890823308974
GO:0051170nuclear import0.0150457621641735
GO:0016835carbon-oxygen lyase activity0.0163909491848989
GO:0008173RNA methyltransferase activity0.0184529769913999
GO:0009982pseudouridine synthase activity0.0184529769913999
GO:0044238primary metabolic process0.0194176846502125
GO:0017038protein import0.0194176846502125
GO:0009451RNA modification0.021700907197464
GO:0033753establishment of ribosome localization0.0222169382126706
GO:0000055ribosomal large subunit export from nucleus0.0222169382126706
GO:0004588orotate phosphoribosyltransferase activity0.0222169382126706
GO:0005674transcription factor TFIIF complex0.0222169382126706
GO:0004590orotidine-5'-phosphate decarboxylase activity0.0222169382126706
GO:0004425indole-3-glycerol-phosphate synthase activity0.0222169382126706
GO:0004595pantetheine-phosphate adenylyltransferase activity0.0222169382126706
GO:0006607NLS-bearing substrate import into nucleus0.0222169382126706
GO:0005726perichromatin fibrils0.0222169382126706
GO:0000054ribosome export from nucleus0.0222169382126706
GO:0033750ribosome localization0.0222169382126706
GO:0005850eukaryotic translation initiation factor 2 complex0.0222169382126706
GO:0022411cellular component disassembly0.0225115369752949
GO:0032991macromolecular complex0.0249157247809523
GO:0016831carboxy-lyase activity0.0303590197785953
GO:0016866intramolecular transferase activity0.0368497520621386
GO:0043023ribosomal large subunit binding0.0376453987481112
GO:0016427tRNA (cytosine)-methyltransferase activity0.0376453987481112
GO:00045345'-3' exoribonuclease activity0.0376453987481112
GO:0004140dephospho-CoA kinase activity0.0376453987481112
GO:0006428isoleucyl-tRNA aminoacylation0.0376453987481112
GO:0016428tRNA (cytosine-5-)-methyltransferase activity0.0376453987481112
GO:0043558regulation of translation initiation in response to stress0.0376453987481112
GO:0016149translation release factor activity, codon specific0.0376453987481112
GO:0043555regulation of translation in response to stress0.0376453987481112
GO:0004822isoleucine-tRNA ligase activity0.0376453987481112



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.6134
MA0004.110.7269
MA0006.14.82555
MA0007.10.804877
MA0009.10.383534
MA0014.11.87196
MA0017.10.158194
MA0019.11.45229
MA0024.10.909219
MA0025.10.134391
MA0027.11.31999
MA0028.123.8271
MA0029.10.118994
MA0030.10.294381
MA0031.10.0231385
MA0038.10.13757
MA0040.10.179837
MA0041.10.0899601
MA0042.10.0167524
MA0043.10.937381
MA0046.10.054497
MA0048.10.268816
MA0050.10.0476506
MA0051.10.147897
MA0052.10.0499251
MA0055.10.000245665
MA0056.10
MA0057.10.0242793
MA0058.14.89962
MA0059.13.87762
MA0060.13.45821
MA0061.10.524848
MA0063.10
MA0066.10.125476
MA0067.11.70018
MA0068.10.278891
MA0069.10.417731
MA0070.10.178716
MA0071.10.0471665
MA0072.10.0449149
MA0073.10.258469
MA0074.10.686202
MA0076.128.6343
MA0077.10.153697
MA0078.10.00519765
MA0081.12.03817
MA0083.10.259233
MA0084.10.426393
MA0087.10.21643
MA0088.11.44032
MA0089.10
MA0090.10.151554
MA0091.10.0770924
MA0092.10.0169587
MA0093.113.0618
MA0095.10
MA0098.10
MA0100.10.162516
MA0101.11.87533
MA0103.10.00681254
MA0105.10.245066
MA0106.10.200457
MA0107.11.43875
MA0108.20.564423
MA0109.10
MA0111.10.0505695
MA0113.10.715849
MA0114.10.214698
MA0115.10.0759986
MA0116.10.103994
MA0117.10.856466
MA0119.10.0923266
MA0122.10.250169
MA0124.10.164838
MA0125.10.126403
MA0130.10
MA0131.12.76327
MA0132.10
MA0133.10
MA0135.10.0890221
MA0136.12.46447
MA0139.10.960189
MA0140.10.281807
MA0141.10.0105513
MA0142.10.227562
MA0143.10.184275
MA0144.10.990764
MA0145.10.442231
MA0146.10.351868
MA0147.112.5931
MA0148.10.0125347
MA0149.10.00263272
MA0062.246.1571
MA0035.20.0845097
MA0039.23.98294
MA0138.20.472944
MA0002.20.0669992
MA0137.21.43518
MA0104.210.5888
MA0047.20.00304271
MA0112.20.241777
MA0065.20.043292
MA0150.10.0228588
MA0151.10
MA0152.10.136826
MA0153.10.317699
MA0154.10.396827
MA0155.10.240967
MA0156.110.1078
MA0157.10.0731293
MA0158.10
MA0159.10.316696
MA0160.10.260083
MA0161.10
MA0162.10.925553
MA0163.10.163039
MA0164.10.211757
MA0080.20.999173
MA0018.22.14555
MA0099.20.128042
MA0079.20.00836004
MA0102.20.468654
MA0258.10.0131569
MA0259.15.45061
MA0442.10
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