CL:0002552

Name:	fibroblast of gingiva
Namespace:	cell
Created by:	tmeehan
Creation date:	2011-02-28T05:09:12Z

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0000057(fibroblast)
part_of:	UBERON:0001828(gingiva)

Children

derives from:	FF:0000063 (human fibroblast of gingiva sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
• 11237-116D4 (Fibroblast - Gingival, donor1)
• 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
• 11318-117D4 (Fibroblast - Gingival, donor2)
• 11394-118C8 (Fibroblast - Gingival, donor3)
• 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
• 11922-125H5 (Fibroblast - Gingival, donor6 (control))
• 11923-125H6 (Fibroblast - Gingival, donor7 (aggressive periodontitis))
• 11924-125H7 (Fibroblast - Gingival, donor7 (control))
• 11925-125H8 (Fibroblast - Gingival, donor8 (chronic periodontitis))

... further results Mouse (Mus musculus)

• 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
• 11237-116D4 (Fibroblast - Gingival, donor1)
• 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
• 11318-117D4 (Fibroblast - Gingival, donor2)
• 11394-118C8 (Fibroblast - Gingival, donor3)
• 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
• 11922-125H5 (Fibroblast - Gingival, donor6 (control))
• 11923-125H6 (Fibroblast - Gingival, donor7 (aggressive periodontitis))
• 11924-125H7 (Fibroblast - Gingival, donor7 (control))
• 11925-125H8 (Fibroblast - Gingival, donor8 (chronic periodontitis))

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002552 (fibroblast of gingiva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
1.29e-97	FFCP PHASE2:Hg19::chr1:75599672..75599682,-	p@chr1:75599672..75599682, -
1.29e-97	FFCP PHASE1:Hg19::chr1:75599672..75599682,-	p@chr1:75599672..75599682, -
3.0e-76	FFCP PHASE2:Hg19::chr1:75598362..75598407,-	p1@ENST00000427892, p1@uc001dgp.1
3.0e-76	FFCP PHASE1:Hg19::chr1:75598362..75598407,-	p1@ENST00000427892, p1@uc001dgp.1
2.01e-53	FFCP PHASE2:Hg19::chr1:75599683..75599699,-	p@chr1:75599683..75599699, -
2.01e-53	FFCP PHASE1:Hg19::chr1:75599683..75599699,-	p@chr1:75599683..75599699, -
2.19e-53	FFCP PHASE2:Hg19::chr9:94586900..94586909,-	p@chr9:94586900..94586909, -
2.19e-53	FFCP PHASE1:Hg19::chr9:94586900..94586909,-	p@chr9:94586900..94586909, -
8.55e-45	FFCP PHASE2:Hg19::chr1:241577071..241577081,+	p@chr1:241577071..241577081, +
8.55e-45	FFCP PHASE1:Hg19::chr1:241577071..241577081,+	p@chr1:241577071..241577081, +
2.63e-43	FFCP PHASE1:Hg19::chr2:172953513..172953549,-	p@chr2:172953513..172953549, -
2.63e-43	FFCP PHASE2:Hg19::chr2:172953513..172953549,-	p@chr2:172953513..172953549, -
2.93e-43	FFCP PHASE1:Hg19::chr16:70597904..70597915,+	p5@SF3B3
2.93e-43	FFCP PHASE2:Hg19::chr16:70597904..70597915,+	p5@SF3B3
2.71e-40	FFCP PHASE1:Hg19::chr12:85306433..85306434,-	p5@SLC6A15
2.71e-40	FFCP PHASE2:Hg19::chr12:85306433..85306434,-	p5@SLC6A15
6.5e-40	FFCP PHASE2:Hg19::chr1:75600318..75600329,+	p4@LHX8
6.5e-40	FFCP PHASE1:Hg19::chr1:75600318..75600329,+	p4@LHX8
1.75e-39	FFCP PHASE2:Hg19::chr1:75600067..75600094,+	p2@LHX8
1.75e-39	FFCP PHASE1:Hg19::chr1:75600067..75600094,+	p2@LHX8
5.92e-38	FFCP PHASE2:Hg19::chr1:83982415..83982420,+	p@chr1:83982415..83982420, +
5.92e-38	FFCP PHASE1:Hg19::chr1:83982415..83982420,+	p@chr1:83982415..83982420, +
9.52e-38	FFCP PHASE1:Hg19::chr6:1389690..1389700,-	p@chr6:1389690..1389700, -
9.52e-38	FFCP PHASE2:Hg19::chr6:1389690..1389700,-	p@chr6:1389690..1389700, -
3.25e-36	FFCP PHASE1:Hg19::chr4:152086796..152086808,-	p18@SH3D19
3.25e-36	FFCP PHASE2:Hg19::chr4:152086796..152086808,-	p18@SH3D19
3.45e-36	FFCP PHASE2:Hg19::chr1:75602043..75602093,+	p1@LHX8
3.45e-36	FFCP PHASE1:Hg19::chr1:75602043..75602093,+	p1@LHX8
2.13e-34	FFCP PHASE1:Hg19::chr6:148761357..148761368,+	p21@SASH1
2.13e-34	FFCP PHASE2:Hg19::chr6:148761357..148761368,+	p21@SASH1
1.23e-32	FFCP PHASE1:Hg19::chr18:46607960..46607989,-	p@chr18:46607960..46607989, -
1.23e-32	FFCP PHASE2:Hg19::chr18:46607960..46607989,-	p@chr18:46607960..46607989, -
1.99e-32	FFCP PHASE2:Hg19::chr12:115777087..115777091,+	p@chr12:115777087..115777091, +
1.99e-32	FFCP PHASE1:Hg19::chr3:170459091..170459101,-	p4@ENST00000473110
1.99e-32	FFCP PHASE1:Hg19::chr12:115777087..115777091,+	p@chr12:115777087..115777091, +
1.99e-32	FFCP PHASE2:Hg19::chr3:170459091..170459101,-	p4@ENST00000473110
1.74e-28	FFCP PHASE2:Hg19::chr4:152086844..152086857,-	p11@SH3D19
1.74e-28	FFCP PHASE1:Hg19::chr4:152086844..152086857,-	p11@SH3D19
4.43e-28	FFCP PHASE2:Hg19::chr9:96717663..96717666,-	p4@BARX1
4.43e-28	FFCP PHASE1:Hg19::chr9:96717663..96717666,-	p4@BARX1
4.61e-28	FFCP PHASE1:Hg19::chr6:1389871..1389876,+	p4@FOXF2
4.61e-28	FFCP PHASE2:Hg19::chr6:1389871..1389876,+	p4@FOXF2
1.82e-27	FFCP PHASE1:Hg19::chr6:57087225..57087229,-	p12@RAB23
1.82e-27	FFCP PHASE2:Hg19::chr6:57087225..57087229,-	p12@RAB23
1.4e-26	FFCP PHASE2:Hg19::chr1:241576976..241576987,+	p@chr1:241576976..241576987, +
1.4e-26	FFCP PHASE1:Hg19::chr1:241576976..241576987,+	p@chr1:241576976..241576987, +
1.81e-26	FFCP PHASE1:Hg19::chrX:19688475..19688492,-	p26@SH3KBP1
1.81e-26	FFCP PHASE2:Hg19::chrX:19688475..19688492,-	p26@SH3KBP1
2.16e-26	FFCP PHASE2:Hg19::chr18:65337698..65337712,+	p@chr18:65337698..65337712, +
2.16e-26	FFCP PHASE1:Hg19::chr18:65337698..65337712,+	p@chr18:65337698..65337712, +
7.91e-25	FFCP PHASE2:Hg19::chr14:37126765..37126799,+	p2@PAX9
7.91e-25	FFCP PHASE1:Hg19::chr14:37126765..37126799,+	p2@PAX9
1.26e-24	FFCP PHASE1:Hg19::chr6:1389613..1389637,-	p@chr6:1389613..1389637, -
1.26e-24	FFCP PHASE2:Hg19::chr6:1389613..1389637,-	p@chr6:1389613..1389637, -
3.13e-24	FFCP PHASE1:Hg19::chr14:37126141..37126157,-	p@chr14:37126141..37126157, -
3.13e-24	FFCP PHASE2:Hg19::chr14:37126141..37126157,-	p@chr14:37126141..37126157, -
9.35e-24	FFCP PHASE2:Hg19::chr2:96012277..96012290,+	p5@KCNIP3
9.35e-24	FFCP PHASE1:Hg19::chr2:96012277..96012290,+	p5@KCNIP3
1.44e-23	FFCP PHASE2:Hg19::chr4:138448109..138448113,-	p@chr4:138448109..138448113, -
1.44e-23	FFCP PHASE1:Hg19::chr4:138448109..138448113,-	p@chr4:138448109..138448113, -
1.61e-23	FFCP PHASE2:Hg19::chr10:28033565..28033575,-	p@chr10:28033565..28033575, -
1.61e-23	FFCP PHASE1:Hg19::chr10:28033565..28033575,-	p@chr10:28033565..28033575, -
1.63e-23	FFCP PHASE2:Hg19::chr1:241577012..241577023,+	p@chr1:241577012..241577023, +
1.63e-23	FFCP PHASE1:Hg19::chr1:241577012..241577023,+	p@chr1:241577012..241577023, +
2.02e-23	FFCP PHASE2:Hg19::chr5:115270490..115270517,-	p@chr5:115270490..115270517, -
2.02e-23	FFCP PHASE1:Hg19::chr5:115270490..115270517,-	p@chr5:115270490..115270517, -
2.57e-23	FFCP PHASE2:Hg19::chr4:4865276..4865280,-	p@chr4:4865276..4865280, -
2.57e-23	FFCP PHASE1:Hg19::chr4:4865276..4865280,-	p@chr4:4865276..4865280, -
4.04e-23	FFCP PHASE2:Hg19::chr8:19364029..19364048,-	p@chr8:19364029..19364048, -
4.04e-23	FFCP PHASE1:Hg19::chr8:19364029..19364048,-	p@chr8:19364029..19364048, -
4.7e-23	FFCP PHASE1:Hg19::chr16:86985410..86985422,-	p@chr16:86985410..86985422, -
4.7e-23	FFCP PHASE2:Hg19::chr16:86985410..86985422,-	p@chr16:86985410..86985422, -
1.21e-22	FFCP PHASE1:Hg19::chr1:31883012..31883032,+	p6@SERINC2
1.21e-22	FFCP PHASE2:Hg19::chr1:31883012..31883032,+	p6@SERINC2
3.25e-22	FFCP PHASE2:Hg19::chr1:31883057..31883076,+	p7@SERINC2
3.25e-22	FFCP PHASE1:Hg19::chr1:31883057..31883076,+	p7@SERINC2
1.83e-21	FFCP PHASE1:Hg19::chr17:80354715..80354726,+	p@chr17:80354715..80354726, +
1.83e-21	FFCP PHASE2:Hg19::chr17:80354715..80354726,+	p@chr17:80354715..80354726, +
3.71e-21	FFCP PHASE2:Hg19::chrX:19688455..19688469,-	p21@SH3KBP1
3.71e-21	FFCP PHASE1:Hg19::chrX:19688455..19688469,-	p21@SH3KBP1
5.15e-21	FFCP PHASE2:Hg19::chr9:3856474..3856490,-	p1@DQ438884
5.15e-21	FFCP PHASE1:Hg19::chr15:33212102..33212104,-	p@chr15:33212102..33212104, -
5.15e-21	FFCP PHASE1:Hg19::chr9:3856474..3856490,-	p1@DQ438884
5.15e-21	FFCP PHASE2:Hg19::chr10:24738547..24738558,+	p39@KIAA1217
5.15e-21	FFCP PHASE1:Hg19::chr6:168333044..168333049,+	p36@MLLT4
5.15e-21	FFCP PHASE2:Hg19::chr6:168333044..168333049,+	p36@MLLT4
5.15e-21	FFCP PHASE1:Hg19::chr17:54893213..54893220,-	p12@C17orf67
5.15e-21	FFCP PHASE2:Hg19::chr8:72274182..72274188,-	p18@EYA1
5.15e-21	FFCP PHASE2:Hg19::chr11:103180104..103180109,+	p@chr11:103180104..103180109, +
5.15e-21	FFCP PHASE2:Hg19::chr2:55831402..55831405,-	p19@SMEK2
5.15e-21	FFCP PHASE2:Hg19::chr15:33212102..33212104,-	p@chr15:33212102..33212104, -
5.15e-21	FFCP PHASE2:Hg19::chr17:54893213..54893220,-	p12@C17orf67
5.15e-21	FFCP PHASE1:Hg19::chr6:117086007..117086014,-	p@chr6:117086007..117086014, -
5.15e-21	FFCP PHASE1:Hg19::chr8:72274182..72274188,-	p18@EYA1
5.15e-21	FFCP PHASE2:Hg19::chr6:117086007..117086014,-	p@chr6:117086007..117086014, -
5.15e-21	FFCP PHASE1:Hg19::chr2:55831402..55831405,-	p19@SMEK2
5.15e-21	FFCP PHASE1:Hg19::chr20:49253425..49253427,-	p14@FAM65C
5.15e-21	FFCP PHASE2:Hg19::chr20:49253425..49253427,-	p14@FAM65C
5.15e-21	FFCP PHASE1:Hg19::chr8:124665891..124665894,-	p@chr8:124665891..124665894, -
5.15e-21	FFCP PHASE1:Hg19::chr17:54893292..54893300,-	p13@C17orf67

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