UBERON:0001134
From FANTOM5_SSTAR
| Name: | skeletal muscle tissue | ||
|---|---|---|---|
| Definition: | "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]. Striated muscle tissue under control of the somatic nervous system. It is one of three major muscle types, the others being cardiac and smooth muscle. As its name suggests, most skeletal muscle is attached to bones by bundles of collagen fibers known as tendons. Skeletal muscle is made up of individual components known as muscle fibers. These fibers are formed from the fusion of developmental myoblasts. The myofibers are long, cylindrical, multinucleated cells composed of actin and myosin myofibrils repeated as a sarcomere, the basic functional unit of the cell and responsible for skeletal muscle's striated appearance and forming the basic machinery necessary for muscle contraction. The term muscle refers to multiple bundles of muscle fibers held together by connective tissue[WP]." [Wikipedia:Skeletal_striated_muscle] | ||
| Xrefs: |
| ||
| Synonyms: |
"skeletal muscle" EXACT [] "skeletal muscle organ" RELATED [] "skeletal muscle system" RELATED [BTO:0001103] "somatic muscle" RELATED [BTO:0001103] | ||
| Comments: | TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Consider FBbt:00005073 - somatic muscle. | ||
| Alt_id: | UBERON:FMA_14069-MA_0002439 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002036(striated muscle tissue) |
|---|---|
| develops_from: | UBERON:0003082(myotome) |
| part_of: | UBERON:0014892(skeletal muscle organ) |
Children
| is a: | UBERON:0003269 (skeletal muscle tissue of eye),UBERON:0003897 (axial muscle),UBERON:0003898 (skeletal muscle of trunk),UBERON:0003899 (skeletal muscle of head),UBERON:0004830 (respiratory system skeletal muscle),UBERON:0010084 (future diaphragm) |
|---|---|
| derives from: | FF:0010023 (human skeletal muscle - adult sample),FF:0010066 (human skeletal muscle - fetal sample) |
| part of: | CL:0000188 (cell of skeletal muscle),CL:0000355 (multi-potent skeletal muscle stem cell),CL:0000515 (skeletal muscle myoblast),CL:0000594 (skeletal muscle satellite cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10300-104H3
- 10310-104I4
- 10328-105B4
- 10338-105C5
... further results Mouse (Mus musculus)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10300-104H3
- 10310-104I4
- 10328-105B4
- 10338-105C5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001134 (skeletal muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.24e-58 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_9343bcb99a9cae921225cd400ef69deb | p@chrX:160838683..160838694, + |
| 5.24e-58 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_9343bcb99a9cae921225cd400ef69deb | p@chrX:160838683..160838694, + |
| 5.11e-50 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_fd0c99777af586859a82fd64ac9c6dfd | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_fd0c99777af586859a82fd64ac9c6dfd | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_fd0c99777af586859a82fd64ac9c6dfd | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_fd0c99777af586859a82fd64ac9c6dfd | p@chrX:65748600..65748616, + |
| 1.47e-48 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_eabc12d12658d55568341a3d85f8d620 | p@chrX:160838787..160838800, + |
| 1.47e-48 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_eabc12d12658d55568341a3d85f8d620 | p@chrX:160838787..160838800, + |
| 3.13e-47 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_2953d2d974d6d404bef01b48b33391f6 | p@chr6:53359400..53359406, + |
| 3.13e-47 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_2953d2d974d6d404bef01b48b33391f6 | p@chr6:53359400..53359406, + |
| 8.42e-44 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_7abcb8a26433a15386b787d09c08b409 | p@chr11:81849982..81850000, + |
| 8.42e-44 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_7abcb8a26433a15386b787d09c08b409 | p@chr11:81849982..81850000, + |
| 1.15e-40 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_16a46cf00ad02297c708d8e41ed6ccc9 | p@chr17:14813242..14813246, - |
| 1.15e-40 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_16a46cf00ad02297c708d8e41ed6ccc9 | p@chr17:14813242..14813246, - |
| 3.7e-39 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_fc8e4e08fc553fd4cc8816c352e72946 | p4@Gpr39 |
| 3.7e-39 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_fc8e4e08fc553fd4cc8816c352e72946 | p4@Gpr39 |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_ea6bc60e4d808dd4011bf152d89912bd | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_ea6bc60e4d808dd4011bf152d89912bd | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_ea6bc60e4d808dd4011bf152d89912bd | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_ea6bc60e4d808dd4011bf152d89912bd | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_ea6bc60e4d808dd4011bf152d89912bd | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_ea6bc60e4d808dd4011bf152d89912bd | p@chrX:160840048..160840057, + |
| 4.61e-38 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_f5eeab4d9fa21d38606e83649880664d | p2@LRRC17 |
| 4.61e-38 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_f5eeab4d9fa21d38606e83649880664d | p2@LRRC17 |
| 6.16e-37 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_e5f67863ce29749faa0d050700fbf79e | p8@ARHGAP22 |
| 6.16e-37 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_e5f67863ce29749faa0d050700fbf79e | p8@ARHGAP22 |
| 7.01e-37 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_2a231697b783232b6bc24fa0eac066af | p@chr9:35685631..35685657, + |
| 7.01e-37 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_2a231697b783232b6bc24fa0eac066af | p@chr9:35685631..35685657, + |
| 9.63e-36 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_808092eb4a9b6763366acdc1326a890c | p4@ARHGAP22 |
| 9.63e-36 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_808092eb4a9b6763366acdc1326a890c | p4@ARHGAP22 |
| 3.31e-35 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_0b2f88fbd604eaa4c2736e4898cde60c | p11@Fam198b |
| 3.31e-35 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_0b2f88fbd604eaa4c2736e4898cde60c | p11@Fam198b |
| 3.69e-35 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_2742fb45a812182d1f43c0f324361c2c | p@chr1:127574253..127574264, + |
| 3.69e-35 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_2742fb45a812182d1f43c0f324361c2c | p@chr1:127574253..127574264, + |
| 4.0e-35 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_392024d4cb46caa408b5749598c379ff | p1@LRRC17 |
| 4.0e-35 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_392024d4cb46caa408b5749598c379ff | p1@LRRC17 |
| 5.09e-35 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_f6dd166a5b2d04bd1295a34d50ee3a26 | p7@Gpr39 |
| 5.09e-35 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_f6dd166a5b2d04bd1295a34d50ee3a26 | p7@Gpr39 |
| 5.48e-35 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_10826d0cb3638bb033f16486813eee33 | p@chr11:102661517..102661541, - |
| 5.48e-35 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_10826d0cb3638bb033f16486813eee33 | p@chr11:102661517..102661541, - |
| 5.98e-35 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_d81004b65bf4a168d08129f406632944 | p11@Gpr39 |
| 5.98e-35 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_d81004b65bf4a168d08129f406632944 | p11@Gpr39 |
| 7.03e-35 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_eda6b91580b30bc2e6789549b7fcdbf2 | p@chrX:160839768..160839780, + |
| 7.03e-35 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_eda6b91580b30bc2e6789549b7fcdbf2 | p@chrX:160839768..160839780, + |
| 1.33e-34 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_8e345afdc3fd371245e154a3b32ff98c | p8@Gpr39 |
| 1.33e-34 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_8e345afdc3fd371245e154a3b32ff98c | p8@Gpr39 |
| 1.83e-34 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_26935565829536d044d4a3e3c923bf09 | p@chr4:74703497..74703511, + |
| 1.83e-34 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_26935565829536d044d4a3e3c923bf09 | p@chr4:74703497..74703511, + |
| 5.92e-34 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_f2fe42dae7426d1fb4430d9b28a2e5b5 | p@chr4:7846444..7846449, - |
| 5.92e-34 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_f2fe42dae7426d1fb4430d9b28a2e5b5 | p@chr4:7846444..7846449, - |
| 2.08e-33 | FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_713fd6ea186ce3e8541be59edaf30e3d | p3@LRRC17 |
| 2.08e-33 | FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_713fd6ea186ce3e8541be59edaf30e3d | p3@LRRC17 |
| 1.42e-32 | FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_7f5a46600178ed9e70b2e16c84126c8e | p2@CXCL6 |
| 1.42e-32 | FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_7f5a46600178ed9e70b2e16c84126c8e | p2@CXCL6 |
| 1.85e-32 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_ec5d595e7ab4b23807e5496f91678f8d | p@chr9:35689148..35689192, + |
| 1.85e-32 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_ec5d595e7ab4b23807e5496f91678f8d | p@chr9:35689148..35689192, + |
| 2.15e-32 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_ce3387d9c993ab37c8b8ac990b2eba05 | p2@SASH1 |
| 2.15e-32 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_ce3387d9c993ab37c8b8ac990b2eba05 | p2@SASH1 |
| 2.89e-32 | FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_953905984e830de7ca372a42d7bebd62 | p@chr4:169059590..169059615, + |
| 2.89e-32 | FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_953905984e830de7ca372a42d7bebd62 | p@chr4:169059590..169059615, + |
| 3.77e-32 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_0d0976d706f02bf4f5c8e2a1b750b244 | p@chr2:134548872..134548879, - |
| 3.77e-32 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_0d0976d706f02bf4f5c8e2a1b750b244 | p@chr2:134548872..134548879, - |
| 3.94e-32 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_7764fdbdf84c60e1dc814a8ebbcd660f | p@chr7:96658543..96658553, - |
| 3.94e-32 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_7764fdbdf84c60e1dc814a8ebbcd660f | p@chr7:96658543..96658553, - |
| 4.14e-32 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_09bad2344c763485dd65129731cdfe82 | p3@IFI27L2 |
| 4.14e-32 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_09bad2344c763485dd65129731cdfe82 | p3@IFI27L2 |
| 4.65e-32 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_0bd9f185d5f1322b9bf4ec094bc8b7df | p@chr9:35684475..35684520, + |
| 4.65e-32 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_0bd9f185d5f1322b9bf4ec094bc8b7df | p@chr9:35684475..35684520, + |
| 8.06e-32 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_995bd8f5ca9e926351047f5226252013 | p1@CU675118 |
| 8.06e-32 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_995bd8f5ca9e926351047f5226252013 | p1@CU675118 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_5de20c835d5ccf18e56e540bf7b06537 | p2@Il6 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_5de20c835d5ccf18e56e540bf7b06537 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_5de20c835d5ccf18e56e540bf7b06537 | p2@Il6 |
| 1.33e-31 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_5de20c835d5ccf18e56e540bf7b06537 | p@chr7:91081998..91082010, - |
| 1.52e-31 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_6caa8d6924a727acea2ff68d23f81ed4 | p@chr9:35685445..35685517, + |
| 1.52e-31 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_6caa8d6924a727acea2ff68d23f81ed4 | p@chr9:35685445..35685517, + |
| 1.59e-31 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_1cb960300de671bce5087e3a87d1d63a | p@chr10:67598037..67598049, - |
| 1.59e-31 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_1cb960300de671bce5087e3a87d1d63a | p@chr10:67598037..67598049, - |
| 2.72e-31 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_4f2553f12222ef4a345bfe3d423f105f | p@chr2:65009852..65009866, - |
| 2.72e-31 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_4f2553f12222ef4a345bfe3d423f105f | p@chr2:65009852..65009866, - |
| 2.8e-31 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_7e66f312357ee9a93512de034548aa12 | p@chr18:52678391..52678395, - |
| 2.8e-31 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_7e66f312357ee9a93512de034548aa12 | p@chr18:52678391..52678395, - |
| 3.27e-31 | FFCP PHASE1:Hg19::chr9:118916063..118916077,+#_40b546e18c73348d271d096d6370040a | p2@PAPPA |
| 3.27e-31 | FFCP PHASE2:Hg19::chr9:118916063..118916077,+#_40b546e18c73348d271d096d6370040a | p2@PAPPA |
| 4.08e-31 | FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_b7f1a53a1dc3483c948a2d809189f6f1 | p3@CXCL6 |
| 4.08e-31 | FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_b7f1a53a1dc3483c948a2d809189f6f1 | p3@CXCL6 |
| 6.01e-31 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_46291eabdf414a236c56645ac53e91c8 | p2@RCN3 |
| 6.01e-31 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_46291eabdf414a236c56645ac53e91c8 | p2@RCN3 |
| 7.63e-31 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_ccbf70d3e53308ae3920ccd45e07ae19 | p2@ELTD1 |
| 7.63e-31 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_ccbf70d3e53308ae3920ccd45e07ae19 | p2@ELTD1 |
| 7.65e-31 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_5c7c19a2ec112b7aa7fdb8be250af581 | p@chr6:91222095..91222107, + |
| 7.65e-31 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_5c7c19a2ec112b7aa7fdb8be250af581 | p@chr6:91222095..91222107, + |
| 1.01e-30 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_f14dead624c0f5f069006e616d8a5a58 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_f14dead624c0f5f069006e616d8a5a58 | p9@Kctd10 |
| 1.17e-30 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_d4828416efa075afbe164b99f4274c56 | p6@Gpr39 |
| 1.17e-30 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_d4828416efa075afbe164b99f4274c56 | p6@Gpr39 |
| 1.35e-30 | FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_245f8f099e9cf280b3b0ef20f56a728b | p@chr4:74703963..74703975, + |
| 1.35e-30 | FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_245f8f099e9cf280b3b0ef20f56a728b | p@chr4:74703963..74703975, + |
| 4.78e-30 | FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_a7e4e2956f6e1db957fbd340135a3037 | p1@BDKRB1 |
| 4.78e-30 | FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_a7e4e2956f6e1db957fbd340135a3037 | p1@BDKRB1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
