DOID:77

Name:	gastrointestinal system disease
Namespace:	FANTOM
Definition:	"A disease of anatomical entity that is located_in the gastrointestinal tract." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
Xrefs:	links: ICD9CM:520-579.99 MSH:D004066 NCI:C2990 SNOMEDCT_2010_1_31:155629009 SNOMEDCT_2010_1_31:155847001 SNOMEDCT_2010_1_31:197575000 SNOMEDCT_2010_1_31:266483008 SNOMEDCT_2010_1_31:53619000 UMLS_CUI:C0012242
Synonyms:	"alimentary system disease" EXACT [] "digestive system disorder" EXACT [] "Gastroenteropathy" EXACT [SNOMEDCT_2005_07_31:25374005] "gastrointestinal disease" EXACT [] "gastrointestinal disorder" EXACT [CSP2005:1248-3545] "GIT disease" EXACT [SNOMEDCT_2005_07_31:53619000]
Alt_id:	DOID:27 DOID:944

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	DOID:7(disease of anatomical entity)

Children

is a:	DOID:3118 (hepatobiliary disease),DOID:403 (mouth disease)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

• 10578-108C2
• 10579-108C3
• 10582-108C6
• 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
• 11923-125H6 (Fibroblast - Gingival, donor7 (aggressive periodontitis))
• 11925-125H8 (Fibroblast - Gingival, donor8 (chronic periodontitis))
• 11928-125I2 (Fibroblast - Gingival, donor10 (periodontitis))

Mouse (Mus musculus)

• 10578-108C2
• 10579-108C3
• 10582-108C6
• 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
• 11923-125H6 (Fibroblast - Gingival, donor7 (aggressive periodontitis))
• 11925-125H8 (Fibroblast - Gingival, donor8 (chronic periodontitis))
• 11928-125I2 (Fibroblast - Gingival, donor10 (periodontitis))

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:77 (gastrointestinal system disease), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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No analysis results